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Search results for spark bioinformatics
bioinformatics
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18 search results found
Gatk
⭐
1,576
Official code repository for GATK versions 4 and up
Adam
⭐
966
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Variantspark
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121
machine learning for genomic variants
Genomicsdb
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88
High performance data storage for importing, querying and transforming variants.
Tiledb Vcf
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79
Efficient variant-call data storage and retrieval library using the TileDB storage library.
Cannoli
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37
Distributed execution of bioinformatics tools on Apache Spark. Apache 2 licensed.
Gor
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37
GORpipe is a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using declarative query language, in a parallel execution engine.
Spark Tutorial
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34
Introduction to predictive modeling in Spark with applications in pharmaceutical bioinformatics
Discount
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14
Very large scale k-mer counting and analysis on Apache Spark.
Spark Genome Alignment Demo
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13
An example of bioinformatics and bigdata tools can playing nicely together
R_bio
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12
바닥부터 시작하는 R + 바이오인포
Deepvariant On Spark
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11
DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.
Convolutional Embedded Networks
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7
Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing
Docker Linuxbrew Bio
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7
Docker images of bioinformatics software built with Linuxbrew
Single Cell Experiments
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7
Experiments to run single cell analyses efficiently at scale using Zarr, anndata, Scanpy, and Apache Spark
Genespark
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5
geneSpark is a bioinformatics software program written in Python and Apache Spark for big data epigenetic histone modification ChIP-seq analysis.
Flint
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5
Main repository of the Flint project for Spark and Amazon EMR.
Genomic Bigdata Spark
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5
Genomic BigData Warehousing with Apache Spark and LakeHouse Architecture
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1-18 of 18 search results
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