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Search results for single cell scrna seq analysis

scrna-seq-analysis x

10 search results found

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

Single Cell Papers With Code ⭐ 193

Papers with code for single cell related papers

R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the malignant cells. It also infers the copy number profile of malignant cells, identifies subclonal structures and analyses the specific and shared alterations of each subpopulation.

scGNN (single cell graph neural networks) for single cell clustering and imputation using graph neural networks

Scclustviz ⭐ 42

Explore and share your scRNAseq clustering results

A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batches

Split Seq_demultiplexing ⭐ 25

An unofficial demultiplexing strategy for SPLiT-seq RNA-Seq data

BITFAM is a Bayesian approach and platform to infer transcription factor activities within individual cells using single cell RNA-sequencing data. Please see Gao S et al., Genome Research (2021) https://genome.cshlp.org/content/31/7/1296 for details.

Northstar ⭐ 23

Single cell type annotation guided by cell atlases, with freedom to be queer

Cell type matching in single-cell RNA-sequencing data using FR-Match

R package that performs sparse factor analysis and differential gene expression discovery simultaneously on single-cell CRISPR screening data.

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