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Search results for simpleitk

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Imagepy ⭐ 1,179

Image process framework based on plugin like imagej, it is esay to glue with scipy.ndimage, scikit-image, opencv, simpleitk, mayavi...and any libraries based on numpy

Simpleitk ⭐ 801

SimpleITK: a layer built on top of the Insight Toolkit (ITK), intended to simplify and facilitate ITK's use in rapid prototyping, education and interpreted languages.

Simpleitk Notebooks ⭐ 779

Jupyter notebooks for learning how to use SimpleITK

Medical image processing in Python

Simpleelastix ⭐ 474

Multi-lingual medical image registration library

Image registration laboratory for 2D and 3D image data

Dicom2stl ⭐ 167

Python script to extract a STL surface from a DICOM image series.

Nonrigid image registration using multi-scale 3D convolutional neural networks

Vnet Tensorflow ⭐ 140

Implementation of vnet in tensorflow for medical image segmentation

Lits Liver Tumor Segmentation Challenge ⭐ 118

LiTS - Liver Tumor Segmentation Challenge

Medicaldataaugmentationtool ⭐ 114

Cnnbasedmedicalsegmentation ⭐ 83

Code for reproducing the results of our paper on CNN-based medical image segmentation

Tutorial ⭐ 80

Command and Real-time Acquisition Parallelized in Python

Promise12_segmentation ⭐ 66

Codes that I have written to complete promise12 prostate segmentation competition.

Medimg_py_library ⭐ 65

A python library for medical image processing, built by the medical imaging group of Dalian Univerisity of Technology, China

Brain_segmentation ⭐ 63

Implementation of VoxResNet for 3D brain segmentation

Neural Image Compression ⭐ 45

Code accompanying the paper Neural Image Compression for Gigapixel Histopathology Image Analysis

Prostate MR Image Segmentation 2012

Unsupervised Medical Image Segmentation ⭐ 42

Code for "Contrastive Registration for Unsupervised Medical Image Segmentation".

BrkRaw: A comprehensive tool to access raw Bruker Biospin MRI data

Pipo Fan ⭐ 39

PIPO-FAN for multi organ segmentation over partial labeled datasets using pytorch

Medical Image Ceil Segment

Brats18 Challege ⭐ 27

Multimodal Brain Tumor Segmentation Challenge 2018

Simpleitk Snap ⭐ 27

A qt-based 3D data visualization tool.

Pytorch Unet3d Single_channel ⭐ 23

3D-Unet: patched based Pytorch implementation for medical images segmentation

Chaos Challenge ⭐ 20

Scripts to work with the chaos challenge

Gdl Fire 4d ⭐ 20

General deep learning-based fast image registration framework for clinical thoracic 4D CT data

Evalutils ⭐ 20

evalutils helps users create extensions for grand-challenge.org

Medical Image Analysis Ipython Tutorials ⭐ 18

Tensorflow_medical_images_segmentation ⭐ 17

Here I post a code for doing segmentation in medical images using tensorflow

Disptools ⭐ 17

Generate displacement fields with known volume changes

Groupregnet ⭐ 16

Implementation of GroupRegNet: A Groupwise One-shot Deep Learning-based 4D Image Registration Method

Simpleitktutorialmiccai2015 ⭐ 16

SimpleITK tutorial at the 2015 MICCAI conference

Torchmed ⭐ 15

Read and process medical data with PyTorch

Unet_3d,Segment

Radiomics Tools ⭐ 14

Image processing tools for radiomics analysis

Simpleitkpythonpackage ⭐ 14

A setup script to generate a Python Wheels

Featurepointdetection ⭐ 14

Face Feature Point Detection

Mri Preprocessing Techniques ⭐ 13

Code examples of the free course in Youtube of brain MRI preprocessing techniques in python

Mrbrains18 ⭐ 12

Grand Challenge on MR Brain Segmentation at MICCAI 2018 - MISPL

Labelfusion ⭐ 9

Implementation of various label fusion approaches for medical imaging.

Playing With Simpleitk ⭐ 9

Playing with SimpleITK and nnU-Net to process data from the CHAOS challenge on Google Colab.

Augmentor3d ⭐ 9

A module for 3D image augmentations for deep learning, specifically medical images such as CT, MRI.

Chainer implementation of 3D Unet for brain segmentaion.

3d U Net Keras ⭐ 8

3D-Unet: patched based Keras implementation for medical images segmentation

imagepy plugins with simpleitk

Medical Images Segmentation Using U Net In Keras ⭐ 8

A back up of my jop

Simpleitkrinstaller ⭐ 7

Devtools based installer for SimpleITK R installer.

Lstm_multi_modal_unet ⭐ 7

Implementation of ICIVC 2019 paper "LSTM multi-modal UNet for Brain Tumor Segmentation"

Simpleitk Miccai 2011 Tutorial ⭐ 7

Repo for the SimpleITK tutorial at MICCAI 2011

Imagej Itk ⭐ 7

ITK integration for ImageJ

Hc18 Automated Measurement Of Fetal Head Circumference ⭐ 7

HC18—Automated measurement of fetal head circumference

Dag V Net ⭐ 6

The code will be made public soon

BLENDER Add-on for CT and CBCT Scans Vizualisation

Lunglobesegmentation ⭐ 6

Lobe Segmentation

Simpleitk Examples ⭐ 6

SimpleITK examples for python

Medical_image_analysis_workshop ⭐ 5

Workshop on Medical Image Analysis using pydicom, SimpleITK, ITK, itkwidgets, numpy, seaborn, and matplotlib

Breast Mri Normalization ⭐ 5

Tubetk Pypbm ⭐ 5

Pattern-based morphometry for vascular analysis.

Generate Image With GAN

Simpleitkcondarecipe ⭐ 5

A Conda recipe for build SimpleITK for the Anaconda Python distribution.

Segmentation Eval ⭐ 5

Extract and evaluate radiomics for liver cancer tumors from DICOM segmentation masks. Using SimpleITK, PyRadiomics and PyDicom.

Namicexternalprojects ⭐ 5

A superbuild infrastructure to build all superbuild structures

Predictfastr ⭐ 5

1-67 of 67 search results

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