SimpleITK is an image analysis toolkit with a large number of components supporting general filtering operations, image segmentation and registration. It is built on top of the Insight Segmentation and Registration Toolkit ITK with the intent of providing a simplified interface to ITK. SimpleITK itself is written in C++ but is available for a large number of programming languages. Currently these include:
Wrapping of the C++ code is accomplished through SWIG, in principle, any language wrapped by SWIG should be applicable to SimpleITK.
Unlike ITK's support of n-dimensional spatio-temporal images, SimpleITK supports 2D, 3D and 4D images. The dimensionality refers to spatio-temporal dimensions, the voxels can be n-dimensional vectors.
SimpleITK is licensed under the Apache License.
SimpleITK development has been supported by:
The Intramural Research Program of the National Institutes of Health, National Institute of Allergy and Infectious Diseases.
The US National Library of Medicine under the American Recovery and Reinvestment Act (ARRA) and under the Intramural Research Program of the U.S. National Institutes of Health.
The Insight Software Consortium and the ITK user and developer communities.
The SimpleITK project is part of the Insight Software Consortium(ISC) a non-profit educational consortium dedicated to promoting and maintaining open-source, freely available software for bio-medical image analysis. The copyright is held by NumFOCUS. The SimpleITK software is distributed under the Apache License 2.0.
If you found SimpleITK useful in your research, support our efforts by citing the relevant publication(s):
R. Beare, B. C. Lowekamp, Z. Yaniv, "Image Segmentation, Registration and Characterization in R with SimpleITK", J Stat Softw, 86(8), https://doi.org/10.18637/jss.v086.i08, 2018.
Z. Yaniv, B. C. Lowekamp, H. J. Johnson, R. Beare, "SimpleITK Image-Analysis Notebooks: a Collaborative Environment for Education and Reproducible Research", J Digit Imaging., 31(3): 290-303, https://doi.org/10.1007/s10278-017-0037-8, 2018.
B. C. Lowekamp, D. T. Chen, L. Ibáñez, D. Blezek, "The Design of SimpleITK", Front. Neuroinform., 7:45. https://doi.org/10.3389/fninf.2013.00045, 2013.
With massive libraries like SimpleITK, good documentation is a must. The documentation for SimpleITK is split up into multiple levels:
SimpleITK provides access to most of the ITK components, but not all. If you are looking for something specific and can't find it, open an issue on GitHub or ask for support on the forum.
Help us improve SimpleITK by reporting issues you encounter. When you report an error, you allow us to address your specific problem, but more importantly you are helping all of the SimpleITK community.
Thank you for helping making SimpleITK better!
All issues are reported and managed on the project's GitHub issue tracker. When reporting an issue, please provide as much information as possible to enable us to reproduce the problem.
The following information will allow us to address your issue in a timely manner: