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7 search results found

Grape Nf ⭐ 35

An automated RNA-seq pipeline using Nextflow

Nextflow Gotchas ⭐ 29

A collection of unexpected challenges and learnings with nextflow and nf-core.

Macse_v2_pipelines ⭐ 21

This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.

A fast, easy way to present complex bioinformatics pipelines to biologists

Kube Runner ⭐ 6

A tool for running bioinformatics workflows on a Kubernetes cluster

Cleansumstats ⭐ 6

Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.

Tronflow Vcf Postprocessing ⭐ 5

A Nextflow variant normalization pipeline based on vt and bcftools

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