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20 search results found

Biosyntax ⭐ 184

Syntax highlighting for computational biology

Gtotree ⭐ 174

A user-friendly workflow for phylogenomics

🆔 Scan contig files against PubMLST typing schemes

VAPiD: Viral Annotation and Identification Pipeline

Assembler Components ⭐ 20

Components of genome sequence assembly tools

Generate de novo taxonomy of full length 16S rRNA sequences directly from environmental samples

Kollector ⭐ 19

de novo targeted gene assembly

Genetic Map Comparison

🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files

Bioinformatics Tools ⭐ 14

Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files

Angsd Wrapper ⭐ 13

Utilities for analyzing next generation sequencing data.

Docker_bwa_aligner ⭐ 13

Docker containers that demonstrate a proof of concept bwa alignment workflow

Illumina Array Protocols ⭐ 11

processing illumina SNP arrays

Sge_mummer ⭐ 10

Scripts to split reference and run mummer in parallel on an SGE cluster

realtime krona plots during a minION run

Plot_mitochondrial_genome_with_circos ⭐ 7

Inpactor: Integrated and Parallel Analyzer and Classifier of LTR Retrotransposons for Large Genomes

Donut: automated Circos visualization of multiple fasta files within a docker image

Extract_promoters ⭐ 6

Bash script for promoter sequences extraction

Leon - FASTA and FASTQ read compressor

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