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Search results for shell bioinformatics pipeline
bioinformatics-pipeline
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13 search results found
Chitin
⭐
56
chitin: an awful shell for awful bioinformaticians
Macse_v2_pipelines
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21
This repository provides source code for several pipelines dedicated to the alignment of nucleotide coding sequences that are based on MACSE. These pipelines are mostly bash scripts encapsulated within singularity containers and sometimes combined in nextflow workflows.
Pipernaseq
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16
A comprehensive pipeline for RNAseq data analysis
Sentieon Dnaseq
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15
Sentieon DNAseq
Guidock
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11
Graphical GUI for Docker (Bioconductor, R, Cytoscape, NetworkBMA)
Sentieon Dnascope Ml
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7
Sentieon DNAscope + Machine Learning Model
Docs
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7
Documentation on St. Jude Cloud.
Kas Analyzer
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6
New computational framework to process and analyze KAS-seq and spKAS-seq data.
Gb Easy
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6
Bioinformatics pipeline to process genotyping-by-sequencing (GBS) data
Metabolicprofile_inferring
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5
Metagenomic functional annotation pipeline
Bioinformatics
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5
Set of high throughput sequencing analysis scripts to quickly generate and queue jobs on SLURM-based HPC clusters.
Mini Pipelines
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5
collection of scripts that chain together other scripts by preparing and processing/transforming data.
Sentieon Google Genomics
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5
Run Sentieon pipelines on Google Cloud Platform
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