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Search results for seurat
seurat
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21 search results found
Scp
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253
An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.
Sccatch
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171
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
Arcoreinsideouttrackinggearvr
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162
Inside Out Positional Tracking (6DoF) for GearVR/Cardboard/Daydream using ARCore v1.6.0
Sccustomize
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142
R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
Tidyseurat
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131
Seurat meets tidyverse. The best of both worlds.
Scpubr
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117
Generate high quality, publication ready visualizations for single cell transcriptomics data.
Cellxgene_vip
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111
Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also performs differential gene expression analysis and provides a Command Line Interface (CLI) for advanced users to perform analysis using python and R.
Interactive 3d Plotting In Seurat 3.0.0
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88
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
Seurat To Rna Velocity
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71
A guide to using a Seurat object in conjunction with RNA Velocity
Cirrocumulus
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63
Bring your single-cell data to life
Reductionwrappers
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32
R wrappers to connect Python dimensional reduction tools and single cell data objects (Seurat, SingleCellExperiment, etc...)
Seuratv3wizard
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26
A web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat v3
Signacx
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22
Signac
Seurat.utils
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19
Various utility functions for Seurat single-cell analysis
Tidygate
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18
Label elements within user drawn gates
Scmiko
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17
R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-cell analytic work flows.
Mudataseurat
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14
.h5mu files interface for Seurat
Nasqar
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10
NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization
Apackoftheclones
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10
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
Pieparty
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7
represent each cell in UMAP plots as a pie chart
Seuratwizard
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7
This is a web-based interactive (wizard style) application to perform a guided single-cell RNA-seq data analysis and clustering based on Seurat.
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1-21 of 21 search results
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