Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for sequencing pathogen
pathogen
x
sequencing
x
19 search results found
Roary
⭐
219
Rapid large-scale prokaryote pan genome analysis
Circlator
⭐
193
A tool to circularize genome assemblies
Artemis
⭐
191
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
Snp Sites
⭐
173
Finds SNP sites from a multi-FASTA alignment file
Gubbins
⭐
154
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
Ariba
⭐
135
Antimicrobial Resistance Identification By Assembly
Assembly Stats
⭐
92
Get assembly statistics from FASTA and FASTQ files
Fastaq
⭐
45
Python3 scripts to manipulate FASTA and FASTQ files
Assembly_improvement
⭐
39
Improve the quality of a denovo assembly by scaffolding and gap filling
Pathogen Informatics Training
⭐
38
Iva
⭐
37
de novo virus assembler of Illumina paired reads
Gff3toembl
⭐
20
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
Plasmidtron
⭐
16
Assembling the cause of phenotypes and genotypes from NGS data
Bio Tradis
⭐
15
A set of tools to analyse the output from TraDIS analyses
Seroba
⭐
14
k-mer based Pipeline to identify the Serotype from Illumina NGS reads
Mlst_check
⭐
14
Multilocus sequence typing by blast using the schemes from PubMLST
Saffrontree
⭐
14
SaffronTree: Reference free rapid phylogenetic tree construction from raw read data
Lodestone
⭐
11
Mycobacterial pipeline
Isb_course_2023
⭐
10
Materials and presentation for the 2023 ISB Microbiome course.
Albatradis
⭐
7
Comparative TraDIS analysis
Related Searches
Python Sequencing (631)
Genome Sequencing (438)
R Sequencing (347)
Pipeline Sequencing (261)
Bioinformatics Sequencing (254)
Dna Sequencing (201)
Sequencing Ngs (182)
C Plus Plus Sequencing (181)
Variants Sequencing (157)
Sequencing Genomics (151)
1-19 of 19 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.