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36 search results found

Vt Unet ⭐ 210

[MICCAI2022] This is an official PyTorch implementation for A Robust Volumetric Transformer for Accurate 3D Tumor Segmentation

Livianet ⭐ 133

This repository contains the code of LiviaNET, a 3D fully convolutional neural network that was employed in our work: "3D fully convolutional networks for subcortical segmentation in MRI: A large-scale study"

Unsupervised_anomaly_detection_brain_mri ⭐ 123

Autoencoders for Unsupervised Anomaly Segmentation in Brain MR Images: A Comparative Study

Advanced Normalization Tools in R

Segmentator ⭐ 68

3D MRI data exploration and segmentation tool.

Mri Deep Learning Tools ⭐ 58

Resurces for MRI images processing and deep learning in 3D

Segnetcmr ⭐ 54

A Tensorflow implementation of SegNet for cardiac MRI segmentation

Brats Toolkit ⭐ 53

Code to preprocess, segment, and fuse glioma MRI scans based on the BraTS Toolkit manuscript.

Brainprep ⭐ 51

Preprocessing pipeline on Brain MR Images through FSL and ANTs, including registration, skull-stripping, bias field correction, enhancement and segmentation.

Semidensenet ⭐ 48

Repository containing the code of one of the networks that we employed in the iSEG Grand MICCAI Challenge 2017, infant brain segmentation.

Hippunfold ⭐ 38

BIDS App for Hippunfold (automated hippocampal unfolding and subfield segmentation)

Brain Tumor Segmentation Using Deep Learning ⭐ 31

#BRATS2015 #BRATS2018 #deep learning #fully automatic brain tumor segmentation #U-net # tensorflow #Keras

NeSVoR is a package for GPU-accelerated slice-to-volume reconstruction.

Brats18 Challege ⭐ 27

Multimodal Brain Tumor Segmentation Challenge 2018

Brain Mri Segmentation ⭐ 25

Smart India Hackathon 2019 project given by the Department of Atomic Energy

Intensity normalization of structural MRIs using RAVEL

Pytorch 3d Medical Images Segmentation Salmon ⭐ 23

Segmentation deep learning ALgorithm based on MONai toolbox: single and multi-label segmentation software developed by QIMP team-Vienna.

Brainy is a virtual MRI analyzer. Just upload the MRI scan file and get 3 different classes of tumors detected and segmented. In Beta.

Nn Segmentation For Lar ⭐ 20

Neural networks to segment some type of biomedical images

Raidionics ⭐ 20

Software for automatic segmentation and generation of standardized clinical reports of brain tumors from MRI volumes

Domainadaptation ⭐ 20

Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

Subpixel Embedding Segmentation ⭐ 20

PyTorch Implementation of Small Lesion Segmentation in Brain MRIs with Subpixel Embedding (ORAL, MICCAIW 2021)

Macapype ⭐ 19

PNH segmentation pipelines based on nipype

Accepted in MIDL 2020

Brain Tumor Segmentation ⭐ 16

Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation

Quantitative MRI toolbox in Python

Ukb_segmentation ⭐ 10

PyTorch implementation for 2.5D U-Net segmentation of UK Biobank neck-to-knee body MRI

Openmap T1 ⭐ 10

Whole Brain Segmentation and Parecllation Using OpenMAP-T1 Method for 3D T1 Brain MRI

Compresso ⭐ 10

Compresso: Efficient Compression of Segmentation Data For Connectomics

Moddropplusplus ⭐ 9

Official PyTorch Implementation of ModDrop++ [MICCAI 2022 (early accept)]. A simple yet effective approach to tackle missing-modality problem for multi-modality medical imaging data.

Fetal Mri Segmentation ⭐ 9

Total Body and Brain 3D Segmentation in Fetal MRI scans

Brain Tumor Mri Dataset ⭐ 8

Utilities to download and load an MRI brain tumor dataset with Python, providing 2D slices, tumor masks and tumor classes.

DL tool for white matter hyperintensities segmentation

Assignment codes for CS736 Algorithms for Medical Image Processing.

Paint4brains ⭐ 7

A brain MRI segmentation tool that provides accurate robust segmentation of problematic brain regions across the neurodegenerative spectrum. The methodology is generalisable to perform well with the typical variance in MRI acquisition parameters and other factors that influence image contrast.

Resseg Ijcars ⭐ 5

Code, data and model for Pérez-García et al. 2021, "A self-supervised learning strategy for postoperative brain cavity segmentation simulating resections"

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