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16 search results found

Pyfaidx ⭐ 427

Efficient pythonic random access to fasta subsequences

The modern C++ library for sequence analysis. Contains version 3 of the library and API docs.

Biowasm ⭐ 165

WebAssembly modules for genomics

Genozip ⭐ 144

A modern compressor for genomic files (FASTQ, SAM/BAM/CRAM, VCF, FASTA, GFF/GTF/GVF, 23andMe...), up to 5x better than gzip and faster too

NGLess: NGS with less work

Learning_bam_file ⭐ 103

Learning the Sequence Alignment/Map format

Biobear ⭐ 100

Work with bioinformatic files using Arrow, Polars, and/or DuckDB

Needlestack ⭐ 39

Multi-sample somatic variant caller

A pipeline to investigate horizontal gene transfer from NGS data

Cnnpeaks ⭐ 13

The ChIP-Seq peak calling algorithm using convolution neural networks

Genopo a.k.a. F5N - A nanopore sequencing analysis toolkit for Android smartphones https://nanoporetech.com

Splicelauncher ⭐ 8

RNAseq pipeline for alternative splicing junctions

A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments.

Metalnx Msi ⭐ 5

Metalnx Micro Services for iRODS

Genotype Collector And Snp Dataset Creator ⭐ 5

Collecting Genotypes from ENA and make their SNPs

Tools For Cancer Genome Analysis ⭐ 5

Installation and usage for various tools for cancer genomics

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Bioinformatics Samtools (14)

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