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Search results for rna seq computational biology
computational-biology
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rna-seq
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11 search results found
Cello
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53
CellO: Gene expression-based hierarchical cell type classification using the Cell Ontology
Cell2cell
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44
User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
Soapdenovo Trans
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27
SOAPdenovo-Trans, a de novo transcriptome assembler designed specifically for RNA-Seq. We evaluated its performance on transcriptome datasets from rice and mouse.
Tape
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25
Deep learning-based tissue compositions and cell-type-specific gene expression analysis with tissue-adaptive autoencoder (TAPE)
Pipeliner
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25
A flexible Nextflow-based framework for the definition of sequencing data processing pipelines
Heatmapgenerator
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19
Cross-platform GUI desktop application for making biological heatmaps
Slamdunk
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18
Streamlining SLAM-seq analysis with ultra-high sensitivity
Microscope
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17
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
Mapp
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7
🗺️ MAPP is a computational method which enables identification of binding motifs for RNA-binding proteins that shape pre-mRNA processing under specific conditions.
Pyfeat 2.x
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6
Biological Feature Representation Tool form the Sequences
Ribo Oddr
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5
Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs
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