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Search results for reproducible science
reproducible-science
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97 search results found
Sacred
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4,162
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
Singularity
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2,500
Singularity has been renamed to Apptainer as part of us moving the project to the Linux Foundation. This repo has been persisted as a snapshot right before the changes.
Nextflow
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2,447
A DSL for data-driven computational pipelines
Wdl
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706
Workflow Description Language - Specification and Implementations
Rescience
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675
The ReScience journal. Reproducible Science is Good. Replicated Science is better.
Rrtools
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619
rrtools: Tools for Writing Reproducible Research in R
Showyourwork
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540
A workflow for reproducible and open scientific articles
Reprozip
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286
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
Containerit
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285
Package an R workspace and all dependencies as a Docker container
Awesome Reproducible Research
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282
A curated list of reproducible research case studies, projects, tutorials, and media
Hydra Zen
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252
Create powerful Hydra applications without the yaml files and boilerplate code.
Fglab
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207
Future Gadget Laboratory
Single Cell Papers With Code
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193
Papers with code for single cell related papers
Itk Wasm
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172
High performance spatial analysis in a web browser, Node.js, and across programming languages and hardware architectures
Liftr
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160
🐳 Containerize R Markdown documents for continuous reproducibility
Datadeps.jl
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146
reproducible data setup for reproducible science
Shournal
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139
Log shell-commands and used files. Snapshot executed scripts. Fully automatic.
Sarek
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126
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Everware
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111
Everware is about re-useable science, it allows people to jump right in to your research code.
Mosqito
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106
MoSQITo is a unified and modular development framework of key sound quality metrics favoring reproducible science and efficient shared scripting among engineers, teachers and researchers community.
Dcmjs
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97
dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
Vistrails
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92
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructure that maintains detailed history information about the steps followed and data derived in the course of an exploratory task: VisTrails maintains provenance of data products, of the computational processes that derive these products and their executions.
Tcpdbench
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82
The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data
Pyseer
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81
SEER, reimplemented in python 🐍🔮
Analysis Flow
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70
Data Analysis Workflows & Reproducibility Learning Resources
Fgmachine
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66
Future Gadget Machine
Mpgap
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51
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
Ten Simple Rules Dockerfiles
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45
Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science
Emp
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44
🔬 Empirical CLI
Reproducible Audio Research
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43
List of Reproducible Audio Research Papers
Analysispreservation.cern.ch
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42
Source code for the CERN Analysis Preservation portal
Testipynb
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39
unit-testing for a collection of jupyter notebooks using nbconvert
Reprosw
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36
Lecture notes (in IPython Notebook format) on Reproducible Science And Modern Scientific Software
Prodigenr
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36
Project directory generator R package
Website
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33
Learn to work more efficiently on empirical research projects.
Pystow
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31
👜 Easily pick a place to store data for your Python code.
Reproducibilidad
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30
Reproducible Science: what, why, how
Openscience
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29
Empirical Software Engineering journal (EMSE) open science and reproducible research initiative
Abide Fmri
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29
Repository for the Brainhack School 2020 team working with fMRI and ABIDE data to train machine learning models.
Literate Programming
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28
This is the repository for the Literate Programming Workshop
Ukbrest
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27
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
Supernnova
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26
Open Source Photometric classification https://supernnova.readthedocs.io
Reproducible Science
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26
material for teaching reproducible science with R and RStudio
Pcbs
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26
Programming for Cognitive and Brain Sciences (code and lectures notes for the Cogmaster's PCBS course)
Researchcompendium
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24
NOTE: This repo is archived. Please see https://github.com/benmarwick/rrtools for my current approach
Ngs Preprocess
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23
A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies
Better Science Code
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23
A presentation on best coding/data management practices based on my own experiences of scientific computing and data analysis and heavily borrowing from the recommendations of many others. View presentation at: https://edeno.github.io/Better-Science-Code
Reproducibility_in_plant_pathology
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20
A systematic/quantitative review of articles, which provides a basis for identifying what has been done so far in the field of plant pathology research reproducibility and suggestions for ways to improving it.
Manuscript
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19
This repository implements an automated system to write our collaborative manuscript, while tracking changes and contributions.
Csv_wrangling
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19
Repository for reproducibility of the CSV file project
Seamless
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19
Seamless is a framework to set up reproducible computations (and visualizations) that respond to changes in cells. Cells contain the input data as well as the source code of the computations, and all cells can be edited interactively.
Repro_web_stack
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19
The stack I use to make reproducible reports of my statistical analyses
Improve Repro Workflow Reproducibilitea 2020
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17
Cortex
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17
Continuously-integrated Open-source Reproducible TeX
Papers As Modules
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17
Software Papers as Software Modules: Towards a Culture of Reusable Results
Reprozip Examples
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14
Examples and demos for ReproZip
Awesome Reproducible R
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13
An awesome list of resources for reproducible research in R. Includes a table of comparison for different tools.
Fossos
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13
seminar series on data science, reproducible science and open source by @maxheld83
Awflow
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13
Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!
Reproducibility News
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12
Currated reproducibility news displayed on reproducibility.org
Computation
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12
notebooks and tutorials on computation in geophysics
R10e Ds Py
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12
Reproducible Data Science in Python (SciPy 2019 Tutorial)
Rmarkdown_workshop
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12
Oss 2017
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11
OSS2017 - Open Science for Synthesis: Gulf Research Program
Msc Data Skills
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11
Materials for MSc Data Skills course
Unmap
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11
Unmap data from a pseudocolor image, with or without knowing the colormap.
Lightr
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11
Import spectral data and related metadata in R
Reproducible Science In R
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11
This site provides information on conducting reproducible science using the R language.
Cyverse Sdk
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10
A resource for CyVerse developers
Dawgz
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10
Unleash the true power of scheduling
D6
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10
R package to simplify workflows of D6 research projects. The package provides utilities to set up a standardized folder structure and version control, and Rmarkdown templates and rendering functionality for a reproducible workflow.
Sclerotinia 366
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9
Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"
Architecture
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9
Architecture and overarching documentation for o2r microservices
Git Training
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9
Git/GitFlow training
Bash Workbench
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9
BASH Workbench
Reproducible Research Practices Workshop
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8
Workshop on reproducible research practices for psychologists
Drr_template
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8
Data Release Reports (DRRs) are descriptions of data packages including data collection methods and quality control analyses.
Quantitative Big Imaging 2019
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8
The material for the Quantitative Big Imaging course at ETHZ for the Spring Semester 2019
Repro_eval
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7
A Python Interface to Reproducibility Measures of System-Oriented IR Experiments
Repro Zoo
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7
Open & executable reproductions of figures and other results from papers in earth science & engineering.
Simple_workflow
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7
A very simple, re-executable neuroimaging publication (code)
Template Computo Quarto
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7
Template for submitting a manuscript with quarto (Jupyter or Rmarkdown)
Module 3 Reproducible Research And Data Analysis
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6
Module 3: Reproducible Research and Data Analysis
Rpsmf
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6
Code for Probabilistic Sequential Matrix Factorization
Piscola
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6
Supernova light-curve fitting code
Reproducible Science Workshop
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6
Material for a workshop on reproducible science with R and RStudio
Clean Water Tool
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6
Reporting Tool to Support Safe Drinking Water in California’s Disadvantaged Communities
Aspecd
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6
Python framework for handling spectroscopic data focussing on reproducibility
Reproducible Research Guidelines
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6
Guidelines for accountable and reproducible computational research
Ism2017
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6
Reproducible research code for the experiments presented in our article "Kara1k: a karaoke dataset for cover song identification and singing voice analysis" published at IEEE ISM 2017
Nbis_project_template
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6
Personal template for making and describing how to do reproducible NBIS support projects
Reproduce_open_data_materials_and_code
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5
Materials for Session 5 of Re:produce workshop
Abra Collaboratory
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5
git reproducible - version control your ideas
Course_website
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5
Material for Software Best Practice course
Ctv Computational Environments
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5
A CRAN task view for computational environments and reproducibility
Watchme
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5
📷 R package that supports the analysis of images annotations 📷
Reproduciblefedgnn
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5
Investigating the reproducibility of federated GNN models
1-97 of 97 search results
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