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Chrom3d
⭐
40
Irep
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37
scripts for estimating bacteria replication rates based on population genome copy number variation
Mcorr
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19
Inferring bacterial recombination rates from large-scale sequencing datasets.
Linked Selection
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19
Argon
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15
Fast, whole-genome simulation of the discrete time Wright-Fisher process
Bs3
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14
BS-Seeker3: An Ultra-fast, Versatile Pipeline for Mapping Bisulfite-treated Reads.
Micro_ga
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11
Genetic Algorithm in Ruby in < 30 lines
Grid
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10
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
Mers_recombination
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6
Does MERS-CoV recombine?
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