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9 search results found

Sccatch ⭐ 171

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

Genetonic ⭐ 74

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

Startapp ⭐ 71

The START App: R Shiny Transcriptome Analysis Resource Tool

Pcaexplorer ⭐ 51

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

Evolutionary Transcriptomics with R

TreeExp 2.0: Toolbox for analyzing expression evolution based on RNA-seq count data

AnceTran2.0: R package for transcriptome evolution analysis based on RNA-seq expression data or ChIP-seq TF-binding data

Trendcatcher ⭐ 7

TrendCatcher is an open source R-package that allows users to systematically analyze and visualize time course data. Please cite "Temporal transcriptomic analysis using TrendCatcher identifies early and persistent neutrophil activation in severe COVID-19" by Xinge Wang et al published in JCI Insight (2022) - https://insight.jci.org/articles/view/157255

RefEx: a reference gene expression dataset of mammalian tissues and cell lines measured by different methods

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