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Search results for r rna seq analysis

rna-seq-analysis x

27 search results found

Reference-guided transcript discovery and quantification for long read RNA-Seq data

Omicsplayground ⭐ 112

Visual self-service analytics platform for big omics data.

Interactive 3d Plotting In Seurat 3.0.0 ⭐ 88

This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data

Genetonic ⭐ 74

Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail

integrated RNA-seq Analysis Pipeline

Pcaexplorer ⭐ 51

pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data

The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.

GREIN : GEO RNA-seq Experiments Interactive Navigator

Interactive Differential Expression AnaLysis - DE made accessible and reproducible

Data-driven Network-based Bayesian Inference of Drivers

Rna Seq Snakemake ⭐ 20

Snakemake based pipeline for RNA-Seq analysis

Make rapid visualizations of RNA-seq data in R

Ularcirc ⭐ 14

An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts

Bioc Rnaseq ⭐ 14

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

Circompara ⭐ 12

🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

Detecting Aberrant Splicing Events from RNA-sequencing data

Hpgltools ⭐ 10

A collection of R functions to aid in host-pathogen genomic research

Automatic RNA-Seq Pipelines with Interactive Report

A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.

Deseq2shiny ⭐ 8

a web-based R shiny application that wraps DESeq2 R package

An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)

Clustifyrdatahub ⭐ 7

External single-cell mRNA sequencing data sets for use with clustifyr

Teal.modules.hermes ⭐ 7

RNA-seq analysis modules to add to a teal application

Rnaseqviewer ⭐ 6

R package for automated, systematic, and integrated RNA-seq differential expression analysis

Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments

Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.

Quality Control, Mapping and Reads Count for RNA-Seq Analysis

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