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Search results for rna seq analysis
rna-seq-analysis
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57 search results found
Scarches
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294
Reference mapping for single-cell genomics
Bambu
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150
Reference-guided transcript discovery and quantification for long read RNA-Seq data
Rnalysis
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114
RNA sequencing analysis software
Omicsplayground
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112
Visual self-service analytics platform for big omics data.
Interactive 3d Plotting In Seurat 3.0.0
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88
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
Genetonic
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74
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Zika Rnaseq Pipeline
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73
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study
Rail
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70
Scalable RNA-seq analysis
Single_cell_portal_core
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60
Rails/Docker application for the Broad Institute's single cell RNA-seq data portal
Irap
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58
integrated RNA-seq Analysis Pipeline
Pcaexplorer
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51
pcaExplorer - Interactive exploration of Principal Components of Samples and Genes in RNA-seq data
Sports1.1
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42
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
Single_cell_portal
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41
Tutorials, workflows, and convenience scripts for Single Cell Portal
Clustering_on_transcript_compatibility_counts
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40
Clustering cells from single cell RNA seq assays
Sprint
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40
SNP-free RNA editing Identification Toolkit
Rop
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35
The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating from repeat sequences, recombinant B and T cell receptors, and microbial communities.
Pipeline Nanopore Ref Isoforms
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35
Pipeline for annotating genomes using long read transcriptomics data with stringtie and other tools
Pmartr
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34
The pmartR R package provides functionality for quality control, normalization, exploratory data analysis, and statistical analysis of mass spectrometry (MS) omics data, in particular proteomic (either at the peptide or the protein level), lipidomic, and metabolomic data.
Grein
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30
GREIN : GEO RNA-seq Experiments Interactive Navigator
Netbid
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28
Data-driven Network-based Bayesian Inference of Drivers
Ideal
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28
Interactive Differential Expression AnaLysis - DE made accessible and reproducible
Imoka
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22
interactive Multi Objective K-mer Analysis
Scgeatoolbox
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21
scGEAToolbox: Matlab toolbox for single-cell gene expression analyses
Rna Seq Snakemake
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20
Snakemake based pipeline for RNA-Seq analysis
Lncpipe
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18
UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets
Workflows Nextflow
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17
Workflow management with Nextflow and nf-core
Orna
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17
Fast in-silico normalization algorithm for NGS data
Pipernaseq
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16
A comprehensive pipeline for RNAseq data analysis
Vidger
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15
Make rapid visualizations of RNA-seq data in R
Bioc Rnaseq
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14
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
Graphclust 2
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14
A pipeline for structural clustering of RNA secondary structures
Ularcirc
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14
An R-shiny app that provides backsplice and canonical splicing analysis for both circular RNA (circRNA) and parental transcripts
Watchdog
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12
Workflow management system for the automated and distributed analysis of large-scale experimental data.
Circompara
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12
🔬 A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Dasper
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10
Detecting Aberrant Splicing Events from RNA-sequencing data
Hpgltools
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10
A collection of R functions to aid in host-pathogen genomic research
Iscandar
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10
Interactive reporting tool for single cell RNA-seq data.
Pyreqtl
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9
A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expression using RNA-sequencing data.
Arpir
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9
Automatic RNA-Seq Pipelines with Interactive Report
Cholar
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9
Automated RNA-seq pipeline for lncRNA indentification
Personalized_regression
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8
Personalized Regression
Deseq2shiny
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8
a web-based R shiny application that wraps DESeq2 R package
Snakemake_rnaseq
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8
A Snakemake pipeline to go from fastq mRNA sequencing files to raw and normalised counts (usable for downstream EDA and differential analysis)
Miarma Seq
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7
miARma-seq: a comprehensive tool for miRNA, mRNA and circRNA analysis
Arseq
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7
An Automated RNASeq Analysis Pipeline (Differential expression to gene enrichment)
Teal.modules.hermes
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7
RNA-seq analysis modules to add to a teal application
Clustifyrdatahub
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7
External single-cell mRNA sequencing data sets for use with clustifyr
4 Rna Seq
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7
A slurm based pipeline for RNA-seq analysis to execute on linux clusters. Feel free to connect to visualize your RNA-seq data on the clouds
Rnaseqviewer
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6
R package for automated, systematic, and integrated RNA-seq differential expression analysis
Raer
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6
Characterize A-to-I RNA editing in bulk and single-cell RNA sequencing experiments
Sequencing_tools
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6
A python package storing different tools for different NGS operations
Ciara_python
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6
Implementation of entropy of mixing algorithm in python
Rawg
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5
RNA-Seq Analysis Workflow Generator
Rnadetector
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5
RNAdetector: a free user-friendly and stand-alone software for RNA-Seq data analysis
Baqcom
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5
Quality Control, Mapping and Reads Count for RNA-Seq Analysis
Methods
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5
Some of the analytical processes and tools we use to provide rigorous and actionable results to our clients.
Snakeflows
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5
Collective Snakemake workflows for easy and reproducible NGS data analysis.
1-57 of 57 search results
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