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Search results for r metabolomics

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This is the git repository matching the Bioconductor package xcms: LC/MS and GC/MS Data Analysis

Compare different differential abundance and expression methods

Low level infrastructure to handle MS spectra

Melonnpan ⭐ 24

Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolic Profiles

Ms Cleanr ⭐ 24

RHermes is a semi-targeted metabolomics package to deeply characterize biological and environmental samples.

Tools Metabolomics ⭐ 21

Galaxy tools for metabolomics maintained by Workflow4Metabolomics

Qfeatures ⭐ 19

Quantitative features for mass spectrometry data

Chemrich ⭐ 19

Chemical Similarity Enrichment analysis of metabolomics datasets

Chromconverter ⭐ 18

Parsers for chromatography data in R (HPLC-DAD/UV, GC-FID, MS)

Metaboseek ⭐ 18

Interactive software to analyze and browse mass spectrometry data

Mscoreutils ⭐ 16

Core Utils for Mass Spectrometry Data

Metarbolomics Book ⭐ 15

The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.

Compounddb ⭐ 15

Creating and using (chemical) compound databases

metaX: a flexible and comprehensive software for processing omics data.

Envigcms ⭐ 14

GC/LC-MS data analysis for environmental science

CRAN Task View: Genomics, Proteomics, Metabolomics, Transcriptomics, and Other Omics

Commonmz ⭐ 14

A collection of common mz values found in mass spectrometry.

Peakpanther ⭐ 12

On-instrument and post-acquisition targeted feature extraction

Xcmsrocker ⭐ 11

Rocker image for metabolomics data analysis

Chromatographr ⭐ 11

Toolset for the reproducible analysis of chromatography data in R (HPLC-DAD/UV, GC-FID).

Pomashiny ⭐ 11

🍎 Web-based User-friendly Workflow for Metabolomics and Proteomics Data Analysis

Metaboannotation ⭐ 9

High level functionality to support and simplify metabolomics data annotation.

An R package and Shiny App for MS-Based Targeted Metabolic Analyses

Metabocoreutils ⭐ 7

Core utilities for metabolomics.

Paired Mass Distance(PMD) analysis for GC/LC-MS based nontarget analysis

🔴OUKS🔵 Omics Untargeted Key Script

geoRge: a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics

Qc4metabolomics ⭐ 7

QC systems for metabolomics studies

Classyfirer ⭐ 7

R Interface to the ClassyFire REST API

Reproducilble Metabolomics Workflow

Metabolome Lipidome Msdial ⭐ 6

Guide to processing raw LCMS metabolomic and lipidomic data using MS-DIAL, followed by data pre-processing and secondary annotation (of metabolites) in R.

Motrpacbicqc ⭐ 6

R package for the MoTrPAC community

Metabcombiner ⭐ 6

metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation

Metabolighter ⭐ 6

R Interface to the Metabolights REST API

Metabridge_shiny ⭐ 6

🕸 Network-based multi-omic integration of metabolomics data.

Msquality ⭐ 6

Protgenerics ⭐ 5

S4 generic functions for Bioconductor mass spectrometry infrastructure

Metabolomics_lectures ⭐ 5

Metabolomicsworkbenchr ⭐ 5

R/Bioconductor Package - Interface to the Metabolomics Workbench RESTful API

Peaklist Annotator and Browser

United Formula Annotation (UFA) for LC-HRMS data

Structtoolbox ⭐ 5

R/Bioconductor package - STRUCT (STatistics in R Using Class Templates) Toolbox

Hastalavista ⭐ 5

R package that provide interactive graphical interface for metabolic profiling

Matrixqcvis ⭐ 5

KPIC2: An Effective Framework for Mass Spectrometry-Based Metabolomics Using Pure Ion Chromatograms

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