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genetics
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29 search results found
Gggenes
⭐
428
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
Gwa_tutorial
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184
A comprehensive tutorial about GWAS and PRS
Impute Me
⭐
92
This is the code behind the www.impute.me site. It contains algorithms for personal genome analysis, including imputation and polygenic risk score calculation
Umx
⭐
40
Making Structural Equation Modeling (SEM) in R quick & powerful
Fastbaps
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31
A fast approximation to a Dirichlet Process Mixture model (DPM) for clustering genetic data
Bgdata
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30
A Suite of Packages for Analysis of Big Genomic Data
Stackr
⭐
17
stackr: an R package to run stacks software pipeline
Graphsim
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16
R package: Simulate Expression data from igraph network using mvtnorm (CRAN; JOSS)
Hlabud
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13
🐶 hlabud: HLA genotype analysis in R
Kgp
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12
1000 Genomes Project Metadata R Package
Epicompare
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10
Comparison, benchmarking & QC of epigenetic datasets
Alphabeta
⭐
10
Computational inference of epimutation rates and spectra from high-throughput DNA methylation data in plants
Bedmatrix
⭐
10
A matrix-like wrapper around PLINK .bed files
Legit
⭐
9
An R package for the Latent Environmental & Genetic InTeraction (LEGIT) model
Snpnet
⭐
9
snpnet - Efficient Lasso Solver for Large-scale genetic variant data
Bwgs
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9
2024 BreedWheat Genomic Selection pipeline
Statgengwas
⭐
8
See https://biometris.github.io/statgenGWAS for a full description
Spagefinder
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7
Computational approach to identify Survival associated Pairwise Gene Expression states.
Intermediate
⭐
7
small R utility for mediation analysis
River
⭐
7
R package for RIVER (RNA-Informed Variant Effect on Regulation)
Plantbreedgame
⭐
7
A serious game to teach plant selective breeding.
Kalis
⭐
6
kalis: High Performance Li & Stephens Local Ancestry Inference
Mtseeker
⭐
6
mitochondrial variant analysis tools
Simulategp
⭐
6
R package to simulate genotype-phenotype maps and analyse them
Statgengxe
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6
See https://biometris.github.io/statgenGxE for a full description
Prs
⭐
5
Toolkit for the efficient construction and analysis of polygenic risk scores in R.
Ctlmapping
⭐
5
Correlated Trait Locus (CTL) mapping
Plot Vcf
⭐
5
visual analysis of your VCF files
Easygen
⭐
5
A suite of packages for quantitative genetics analysis and more!
Dddnoncoding2017
⭐
5
Code for paper published in March, 2017 analysing the role of de novo mutations in severe developmental disorders (part of the deciphering developmental disorders project).
Rdna Nexus
⭐
5
Functions to analyse UK Biobank genetic data directly from DNA Nexus' RStudio Workbench
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1-29 of 29 search results
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