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17 search results found

Ggcoverage ⭐ 187

Visualize and annotate genomic coverage with ggplot2

Rnaseq Workflow ⭐ 133

A repository for setting up a RNAseq workflow

Transplotr ⭐ 45

An elegant package to visualize gene structures

R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/

Genekitr ⭐ 37

🧬 Gene analysis toolkit based on R

Orthogene ⭐ 31

🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃‍♀️

Sig Bio Shiny ⭐ 25

An interactive application suite/interface for doing Exploration and Significant Biology on a set of Genes.

Recount3 ⭐ 24

Explore and download data from the recount3 project

Molecular Signatures Database (MSigDB) in a data frame

Inferring gene co-expression networks from single cell gene expression data

Gene Co-expression Network analysis pipeline

Package to calculate functional similarity between genes https://biocor.llrs.dev

Entrez Rs ⭐ 12

A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.

Molecular Signatures Database as a list

Genoplotr_wrapper ⭐ 7

Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package

An R software for Gene Co-Expression Analysis

Build Annotation package by using information from KEGG, NCBI, Ensembl

💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).

Geneoncox ⭐ 6

Human gene annotations for the oncology domain

RefEx: a reference gene expression dataset of mammalian tissues and cell lines measured by different methods

Genebridge ⭐ 6

Integrative systems analysis identifying the associations between genes and biological process or modules.

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