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gene
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73 search results found
Volcano
⭐
3,577
A Cloud Native Batch System (Project under CNCF)
Augustus
⭐
237
Genome annotation with AUGUSTUS
Ggcoverage
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187
Visualize and annotate genomic coverage with ggplot2
Gtz
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156
A high performance and compression ratio compressor for genomic data, powered by GTXLab of Genetalks.
Rnaseq Workflow
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133
A repository for setting up a RNAseq workflow
Lineage
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114
tools for genetic genealogy and the analysis of consumer DNA test results
Mygene.info
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109
MyGene.info: A BioThings API for gene annotations
Cmappy
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86
Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools
Genefuse
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86
Gene fusion detection and visualization
Biolink Api
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53
API for linked biological knowledge
Gencode_regions
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52
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns, Exons from GTF files
Genotify
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51
A minimal desktop app for easy and convenient gene annotation.
Genelab_data_processing
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50
Transplotr
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45
An elegant package to visualize gene structures
Gvanno
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43
Generic human DNA variant annotation pipeline
Recount
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40
R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
Camoco
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40
Camoco is a fully-fledged software package for building co-expression networks and analyzing the overlap interactions among genes.
Genekitr
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37
🧬 Gene analysis toolkit based on R
Hmmer2go
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36
Annotate DNA sequences for Gene Ontology terms
Haystack_bio
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35
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
Orthogene
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31
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
Gene
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30
Grace, fastest, flexibility, simple PHP extension framework!优雅、极速、灵活、简单的PHP扩展框架!
Pygtftk
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30
A python package and a set of shell commands to handle GTF files
Genetic Trait Detector
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30
This python script detects known traits in raw human genetic data.
Fegenie
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29
HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes
Go Annotation
⭐
29
This repository hosts the tracker for issues pertaining to GO annotations.
Amigo
⭐
28
AmiGO is the public interface for the Gene Ontology.
Sig Bio Shiny
⭐
25
An interactive application suite/interface for doing Exploration and Significant Biology on a set of Genes.
Recount3
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24
Explore and download data from the recount3 project
Funricegenes
⭐
24
The knowledge of cloned rice genes lost in the information of rice functional genomics studies
Fusiondirect.jl
⭐
23
(No maintenance) Detect gene fusion directly from raw fastq files
Snpsea
⭐
23
📊 Identify cell types and pathways affected by genetic risk loci.
Qrcode Generator
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22
Easy and simple way to generate QR code
Genelab Training
⭐
22
A repository for GeneLab Training documentation.
Msigdf
⭐
18
Molecular Signatures Database (MSigDB) in a data frame
Fit
⭐
18
Fusion ICA Toolbox (MATLAB)
Agm
⭐
16
AGM阿格姆:AI基因图谱模型,从token-weight权重微粒角度,探索AI模型,GPT\LLM
Sclink
⭐
15
Inferring gene co-expression networks from single cell gene expression data
Gwena
⭐
15
Gene Co-expression Network analysis pipeline
Helpdesk
⭐
15
The Gene Ontology Helpdesk
Biocor
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14
Package to calculate functional similarity between genes https://biocor.llrs.dev
Genescf
⭐
14
Gene Set Clustering based on Functional annotation
Digitalcellsorter
⭐
14
Digital Cell Sorter (DCS): single cell RNA-seq analysis toolkit. Documentation:
Gene For Php5
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14
Simple, high performance,C extension framework for php!
Ensembl Genes
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13
Extract the Ensembl genes catalog to simple tables
Gene Oracle
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13
Feature extraction algorithm for genomic data
Entrez Rs
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12
A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.
Sting
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12
Ultrafast sequence typing and gene detection from NGS raw reads
Pubgpt
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12
Extract relevant informations in PubMed papers in a simple way.
Genefinder.jl
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12
A Gene Finder framework for Julia.
Patientmatcher
⭐
11
A MatchMaker Exchange server
Genomicannotations.jl
⭐
11
Monografia
⭐
11
🎓 Monografia / TCC / Sistemas de Informação
Msigdb
⭐
11
Molecular Signatures Database as a list
Sequence Database Curator
⭐
10
This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).
Bionet
⭐
10
🎓 BioNet / TCC / Sistemas de Informação
Grnboost
⭐
9
Scalable inference of gene regulatory networks using Apache Spark and XGBoost
Bgee_pipeline
⭐
8
Source code of the Bgee pipeline used to build the Bgee database
Phenogrid
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8
The phenogrid widget
Tmea
⭐
7
Thermodynamically Motivated Enrichment Analysis (TMEA) is a new approach to gene set enrichment analysis.
Tsunami
⭐
7
An R software for Gene Co-Expression Analysis
Genoplotr_wrapper
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7
Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR package
Mage
⭐
7
MAGE :: Meta-Analysis of Gene Expression
Reportit
⭐
6
IonTorrent variant reporting pipeline for clinical interpretation of cancer panel results
Bioanno
⭐
6
Build Annotation package by using information from KEGG, NCBI, Ensembl
Genebridge
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6
Integrative systems analysis identifying the associations between genes and biological process or modules.
Snplentiful
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6
SNP abundance correlates with network degree
Cancer
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6
💹 The package is user friendly interface based on the cgdsr and other modeling packages to explore, compare, and analyse all available Cancer Data (Clinical data, Gene Mutation, Gene Methylation, Gene Expression, Protein Phosphorylation, Copy Number Alteration) hosted by the Computational Biology Center at Memorial-Sloan-Kettering Cancer Center (MSKCC).
Geneoncox
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6
Human gene annotations for the oncology domain
Refex
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6
RefEx: a reference gene expression dataset of mammalian tissues and cell lines measured by different methods
Genesdecypher
⭐
5
A genetic decypher written in C. A school work of a student at Universidade Metodista de Angola.
Metadome
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5
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
Prfect
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5
Software to predict the occurence of programmed ribosomal frameshifting in bacterial, phage, and viral genomes
1-73 of 73 search results
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