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Search results for python wdl
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12 search results found
Toil
⭐
874
A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
Miniwdl
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160
Workflow Description Language developer tools & local runner
Tibanna
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68
Tibanna helps you run your genomic pipelines on Amazon cloud (AWS). It is used by the 4DN DCIC (4D Nucleome Data Coordination and Integration Center) to process data. Tibanna supports CWL/WDL (w/ docker), Snakemake (w/ conda) and custom Docker/shell command.
Pytest Workflow
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52
Configure workflow/pipeline tests using yaml files.
Cromshell
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51
CLI for interacting with Cromwell servers
Janis
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39
[Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
Oliver
⭐
36
An opinionated Cromwell orchestration manager.
Wdl Ide
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26
Rich IDE support for Workflow Description Language
Wdldoc
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26
Create WDL documentation using Markdown.
Wdl2cwl
⭐
26
[Experimental] Workflow Definition Language (WDL) to CWL
Clihelpparser
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13
Library for reading the output from CLI help commands, and generating machine readable schemas (CWL etc)
Swipe
⭐
5
SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projects
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