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Search results for python topological data analysis

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37 search results found

Uniform Manifold Approximation and Projection

Giotto Tda ⭐ 658

A high-performance topological machine learning toolbox in Python

Kepler Mapper ⭐ 605

Kepler Mapper: A flexible Python implementation of the Mapper algorithm.

TTK - Topological Data Analysis and Visualization - Source Code

Scikit Tda ⭐ 337

Topological Data Analysis for Python🐍

Gudhi Devel ⭐ 221

The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.

Findpeaks ⭐ 174

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

Topological Data Analysis in Python

Pytorch Topological ⭐ 119

A topological machine learning framework based on PyTorch

Mogutda ⭐ 105

Topological Data Analysis in Python: Simplicial Complex

Topological Autoencoders ⭐ 62

Code for the paper "Topological Autoencoders" by Michael Moor, Max Horn, Bastian Rieck, and Karsten Borgwardt.

A Persistent Weisfeiler–Lehman Procedure for Graph Classification

Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)

Persistable ⭐ 31

density-based clustering for exploratory data analysis based on multi-parameter persistence

topological data analysis of population-scale microbiomes

TARDIS: Topological Algorithms for Robust DIscovery of Singularities

Mapper Tda ⭐ 22

Mapper implementation (Topological Data Analysis) in Python

Shapr_torch ⭐ 22

SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"

Aml Days Tda Tutorial ⭐ 20

Tadasets ⭐ 20

Synthetic data sets apt for Topological Data Analysis

Infotopopy ⭐ 17

computes most of information functions (joint entropy, conditional, mutual information, total correlation information distance) and deep information networks

Filtration_curves ⭐ 17

Code for the KDD 2021 paper 'Filtration Curves for Graph Representation'

Python-based persistent homology algorithms

Topogenesis ⭐ 14

Python Package for Generative Systems and Sciences

Perturbed Topological Signature ⭐ 11

Matlab and Python code to compute perturbed topological signatures (PTS), an efficient topological representation that lies on the Grassmann manifold.

Coinworks ⭐ 10

Vectorisation App ⭐ 10

This web app can be used to compute and visualize featurized PH barcodes.

Molecule_bond_prediction ⭐ 8

Predict scalar coupling in molecules

Chromatic Tda ⭐ 8

Tool to compute six-packs of persistence diagrams for chromatic point clouds [packaged on PyPI]

Pyflagser ⭐ 8

Python bindings and API for the flagser C++ library (https://github.com/luetge/flagser).

Tda Digits ⭐ 8

Topological features applied to the digits data set

Galaxywitness ⭐ 7

Package for topological data analysis of the big data. It is attempt to study distribution of galaxies in the universe via TDA

Vectorization Maps ⭐ 7

Vectorization of persistence diagrams and approximate Wasserstein distance

Multipers ⭐ 7

Scikit-style multiparameter persistent homology.

Multipers Signed Measure ⭐ 5

Scikit-style multiparameter persistent homology, using signed measure and their representation for machine learning.

Vascular Tda ⭐ 5

Software to analyse the topology of vascular networks.

Topological Dvae ⭐ 5

An implementation of Denoising Variational AutoEncoder with Topological loss

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