Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for topological data analysis
topological-data-analysis
x
74 search results found
Umap
⭐
6,672
Uniform Manifold Approximation and Projection
Giotto Tda
⭐
658
A high-performance topological machine learning toolbox in Python
Kepler Mapper
⭐
605
Kepler Mapper: A flexible Python implementation of the Mapper algorithm.
Ttk
⭐
386
TTK - Topological Data Analysis and Visualization - Source Code
Scikit Tda
⭐
337
Topological Data Analysis for Python🐍
Ripser.py
⭐
258
A Lean Persistent Homology Library for Python
Ripser
⭐
235
Ripser: efficient computation of Vietoris–Rips persistence barcodes
Gudhi Devel
⭐
221
The GUDHI library is a generic open source C++ library, with a Python interface, for Topological Data Analysis (TDA) and Higher Dimensional Geometry Understanding.
Findpeaks
⭐
174
The detection of peaks and valleys in a 1d-vector or 2d-array (image)
Pytda
⭐
144
Topological Data Analysis in Python
Topomodelx
⭐
120
Topological Deep Learning
Pytorch Topological
⭐
119
A topological machine learning framework based on PyTorch
Awesome Tda
⭐
117
A curated list of topological data analysis (TDA) resources and links.
Umap.jl
⭐
115
Uniform Manifold Approximation and Projection (UMAP) implementation in Julia
Mogutda
⭐
105
Topological Data Analysis in Python: Simplicial Complex
Toponetx
⭐
102
Computing on Topological Domains
Umato
⭐
98
Uniform Manifold Approximation with Two-phase Optimization (IEEE VIS 2022 short)
Aleph
⭐
89
A library for exploring persistent homology
Rivet
⭐
63
RIVET is a tool for Topological Data Analysis, in particular two-parameter persistent homology.
Topological Autoencoders
⭐
62
Code for the paper "Topological Autoencoders" by Michael Moor, Max Horn, Bastian Rieck, and Karsten Borgwardt.
Quantq
⭐
61
The repository for the Machine Learning and Big Data with kdb+/q book by Novotny et al.
Spark Tda
⭐
46
SparkTDA is a package for Apache Spark providing Topological Data Analysis Functionalities.
P Wl
⭐
44
A Persistent Weisfeiler–Lehman Procedure for Graph Classification
Sctda
⭐
43
An object oriented python library for topological data analysis of high-throughput single-cell RNA-seq data
Network_tda_tutorial
⭐
43
This repository is dedicated for the tutorial on network and topological neuroscience.
Dyneusr
⭐
40
Dynamical Neuroimaging Spatiotemporal Representations (DyNeuSR)
Ripserer.jl
⭐
38
Flexible and efficient persistent homology computation.
Persistable
⭐
31
density-based clustering for exploratory data analysis based on multi-parameter persistence
Antz
⭐
28
ANTz immersive 3D data visualization engine
Tdastats
⭐
28
R pipeline for computing persistent homology in topological data analysis. See https://doi.org/10.21105/joss.00860 for more details.
Tmap
⭐
26
topological data analysis of population-scale microbiomes
Giotto Ph
⭐
25
High performance implementation of Vietoris-Rips persistence.
Tardis
⭐
25
TARDIS: Topological Algorithms for Robust DIscovery of Singularities
Torchph
⭐
23
The essence of my research, distilled for reusability. Enjoy 🥃!
Mapper Tda
⭐
22
Mapper implementation (Topological Data Analysis) in Python
Shapr_torch
⭐
22
SHAPR: Code for "Capturing Shape Information with Multi-Scale Topological Loss Terms for 3D Reconstruction"
Persistence
⭐
21
A topological data analysis library for Haskell
Tda.jl
⭐
20
A Julia package for topological data analysis
Aml Days Tda Tutorial
⭐
20
Tadasets
⭐
20
Synthetic data sets apt for Topological Data Analysis
Pi Net
⭐
20
Python code to directly compute persistence images (PIs) from data (time-series or images) using deep learning.
Filtration_curves
⭐
17
Code for the KDD 2021 paper 'Filtration Curves for Graph Representation'
Infotopopy
⭐
17
computes most of information functions (joint entropy, conditional, mutual information, total correlation information distance) and deep information networks
Ggtda
⭐
15
ggplot2 extension to visualize persistent homology
Gd Vae
⭐
15
Geometric Dynamic Variational Autoencoders (GD-VAEs) for learning embedding maps for nonlinear dynamics into general latent spaces. This includes methods for standard latent spaces or manifold latent spaces with specified geometry and topology. The manifold latent spaces can be based on analytic expressions or general point cloud representations.
Pyper
⭐
15
Python-based persistent homology algorithms
Openph
⭐
14
Parallel reduction of boundary matrices for Persistent Homology with CUDA
Topogenesis
⭐
14
Python Package for Generative Systems and Sciences
Simplicial_neural_networks
⭐
13
Simplicial neural networks (SNNs), a generalization of graph neural networks to data that live on a class of topological spaces called simplicial complexes.
Simplextree
⭐
13
R package for simplifying general computation on simplicial complexes
Spark Mapper
⭐
13
Spark based implementation of the Topological Mapper algorithm
Perturbed Topological Signature
⭐
11
Matlab and Python code to compute perturbed topological signatures (PTS), an efficient topological representation that lies on the Grassmann manifold.
Decorated Merge Trees
⭐
11
Tools for generating and comparing Decorated Merge Trees, enriched persistence-based topological data descriptors.
Vectorisation App
⭐
10
This web app can be used to compute and visualize featurized PH barcodes.
Coinworks
⭐
10
Awesome Topological Data Analysis
⭐
9
A collection of topological data analysis links, frameworks, libraries and software. Inspired by awesome projects line.
Rayleighselection
⭐
8
An R package for feature selection in topological spaces.
Molecule_bond_prediction
⭐
8
Predict scalar coupling in molecules
Sinatra
⭐
8
A statistical framework for feature selection and association mapping with 3D shapes
Chromatic Tda
⭐
8
Tool to compute six-packs of persistence diagrams for chromatic point clouds [packaged on PyPI]
Pyflagser
⭐
8
Python bindings and API for the flagser C++ library (https://github.com/luetge/flagser).
Tda Digits
⭐
8
Topological features applied to the digits data set
Donut
⭐
7
DONUT: Database of Original and Non-Theoretical Applications of Topology
Gromov Wasserstein Statistics
⭐
7
Statistics on the space of asymmetric networks via Gromov-Wasserstein distance
Ripser.jl
⭐
7
Simple Ripser wrapper in Julia
Vectorization Maps
⭐
7
Multipers
⭐
7
Scikit-style multiparameter persistent homology.
Pervect
⭐
7
Vectorization of persistence diagrams and approximate Wasserstein distance
Galaxywitness
⭐
7
Package for topological data analysis of the big data. It is attempt to study distribution of galaxies in the universe via TDA
Hiddenbeginner.github.io
⭐
6
데이터사이언스 기술 블로그
Vascular Tda
⭐
5
Software to analyse the topology of vascular networks.
Topological Dvae
⭐
5
An implementation of Denoising Variational AutoEncoder with Topological loss
Multipers Signed Measure
⭐
5
Scikit-style multiparameter persistent homology, using signed measure and their representation for machine learning.
Masters Thesis Ml
⭐
5
Repository for my master's thesis in machine learning at UiB
1-74 of 74 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.