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Search results for python taxonomy

38 search results found

Vulnerability Rating Taxonomy ⭐ 387

Bugcrowd’s baseline priority ratings for common security vulnerabilities

GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

Misp Taxonomies ⭐ 238

Taxonomies used in MISP taxonomy system and can be used by other information sharing tool.

Application and Python module for average nucleotide identity analyses of microbes.

Ncbitax2lin ⭐ 96

🐞 Convert NCBI taxonomy dump into lineages

ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refseq/genbank), taxonomic profiling (ncbi/gtdb), binning and hierarchical classification, customized reporting and more

code for the paper "End-to-End Reinforcement Learning for Automatic Taxonomy Induction" ACL 2018

Aniclustermap ⭐ 38

A tool for drawing ANI clustermap between all-vs-all microbial genomes

Naturtag ⭐ 34

Tag your nature photos with iNat taxonomy and observation metadata

Kraken Biom ⭐ 33

Create BIOM-format tables (http://biom-format.org) from Kraken output (http://ccb.jhu.edu/software/kraken/, https://github.com/DerrickWood/kraken).

🐣 locally query the ncbi taxonomy

Nature Id ⭐ 29

Identify plants, birds, and insects in photos. Should an identification to species be unsuccessful, an identification to a higher taxonomic level - like genus, family, or order - is made.

Pytaxonomies ⭐ 26

Python module to use the MISP Taxonomies

Pytaxize ⭐ 25

python port of taxize (taxonomy toolbelt) for R

Ncbitaxon ⭐ 24

Build for NCBITaxon

MkDocs plugin to generate semantic reference Markdown pages from a knowledge graph

Multitax ⭐ 23

Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)

Application de gestion des taxons

Phantasm ⭐ 20

PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes

Taxonomy4good ⭐ 20

Taxonomy4Good: a sustainability lexicon that provides the freedom to create custom taxonomies in addition to listed ESG and Sustainability Standards taxonomies.

Metameta ⭐ 18

Collective.taxonomy ⭐ 18

Create, edit and use hierarchical taxonomies in Plone!

Pytaxonkit ⭐ 17

Python bindings for the TaxonKit library

Whokaryote ⭐ 17

Classify metagenomic contigs as eukaryotic or prokaryotic

Taxonomy_refinement_embeddings ⭐ 16

Taxonomy refinement method to improve domain-specific taxonomy systems.

Development of the Gellish Communicator reference application and tools for universal data exchange and data integration supporting Formal English and other Gellish formalized natural languages.

Taxonomy Editor ⭐ 14

Taxonomies are at the heart of Open Food Facts data structure - this project provides an editor

In silico taxonomic classification of Bacillus cereus group genomes using whole-genome sequencing data

Pragmatic Guide To Geoparsing Evaluation ⭐ 11

Full resources supporting the publication "A Pragmatic Guide to Geoparsing Evaluation."

Tag2domain ⭐ 11

A mapping project between tags (annotations, labels) and domain names

taxonomic classes for Python

Timedomain Taxonomy ⭐ 9

Open, versioned taxonomy for astronomical time-series sources

Nxontology Data ⭐ 8

NXOntology data: making ontologies accessible as simple JSON files

Taxopedia ⭐ 7

Taxonomic trees (cladograms) from Wikipedia-scraped data.

📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

Taxonomy of Benchmarks in Graph Representation Learning

GenBank Record downloader for taxonomists

Taxonomy_ranks ⭐ 6

To get taxonomy ranks information with ETE3 Python3 module (http://etetoolkit.org/)

research software engineering taxonomy and criteria

VocView: a SKOS vocabulary viewer web application written in Python. Tags: RDF, OWL, RDFS, SKOS, vocabularies, taxonomies, RDFLib, pyLDAPI, triplestore, Linked Data, Semantic Web

Fungal Identification Pipeline

Opcluster ⭐ 5

An automatic opinion implicit and explicit aspect identification and clustering tool for aspect-based opinion mining / sentiment analysis applications. Opcluster-PT also allows the customization for other languages, being minimally necessary a lexical language resource as such as WordNet, deverbal, foreign, diminutive and enhancing Lexicon. OpCluster-PT is currently customized for Brazilian Portuguese.

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