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Search results for python synthetic biology

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27 search results found

Dnafeaturesviewer ⭐ 500

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

Dnachisel ⭐ 168

✏️ A versatile DNA sequence optimizer

Deepbgc ⭐ 102

BGC Detection and Classification Using Deep Learning

Cell Detr ⭐ 57

Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].

Dnacauldron ⭐ 43

⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

Retropathrl ⭐ 33

Reinforcement Learning based bioretrosynthesis tool

Interpretable genotype-phenotype landscape modeling

Open source biolab

Sequenticon ⭐ 28

👾 Generate identicons for DNA sequences with Python

Geneblocks ⭐ 27

💠 Find common blocks and differences between DNA sequences

Primavera ⭐ 25

🌸 Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.

Dnaweaver ⭐ 22

A route planner for DNA assembly

Crazydoc ⭐ 22

Read DNA sequences from colourful Microsoft Word documents

Caravagene ⭐ 19

🎨 Python library to plot multi-part genetic constructs

Accurate segmentation of bacterial microscope images using synthetically generated image data.

Genome_collector ⭐ 17

🌠 Easily download genomes and build BLAST/Bowtie indexes in Python

Rp2paths ⭐ 14

RetroPath2.0 to pathways

Bandwitch ⭐ 13

💫 Computer-aided DNA assembly validation and identification from restriction digests.

Batch domestication of genetic parts with Python

🐾 DNA overhang misannealing data for Python

Goldenhinges ⭐ 8

🔗 Short overhangs design for DNA assembly

Software for predicting translation initiation rates in bacteria

✂️ Design compact restriction sites arrays (python utility)

Advancesyntoolkit ⭐ 7

Toolkit for Modelling and Simulation of Gene Expressions and Metabolism

Multi Stylegan ⭐ 7

Official and maintained implementation of the paper "Multi-StyleGAN: Towards Image-Based Simulation of Time-Lapse Live-Cell Microscopy" [MICCAI 2021].

Sbol Validator ⭐ 5

A web application to validate SBOL files

Kappagate ⭐ 5

🔮 Predict DNA assembly clone validity rates - powered by Kappa

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