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54 search results found

A Go package for engineering organisms.

Genetic circuit design automation

Dnafeaturesviewer ⭐ 500

👁️ Python library to plot DNA sequence features (e.g. from Genbank files)

a JavaScript DNA, RNA, and protein sequence viewer

Dnachisel ⭐ 168

✏️ A versatile DNA sequence optimizer

Deepbgc ⭐ 102

BGC Detection and Classification Using Deep Learning

For finding, sharing and exchanging Data, Models, Simulations and Processes in Science.

Synbiohub ⭐ 67

Web application enabling users and software to browse, upload, and share synthetic biology designs

Computational synthetic biology: Predicting DNA edits for bioengineering

Cell Detr ⭐ 57

Official and maintained implementation of the paper "Attention-Based Transformers for Instance Segmentation of Cells in Microstructures" [BIBM 2020].

Cello V2 ⭐ 49

Cello v2 is the continuation of the Cello genetic circuit design software.

Dnacauldron ⭐ 43

⚗️ Simple cloning simulator (Golden Gate etc.) for single and combinatorial assemblies

🤖 Python biolab automation library: parsers, reports generators, picklists simulators, and more

Retropathrl ⭐ 33

Reinforcement Learning based bioretrosynthesis tool

Interpretable genotype-phenotype landscape modeling

Open source biolab

Sequenticon ⭐ 28

👾 Generate identicons for DNA sequences with Python

Geneblocks ⭐ 27

💠 Find common blocks and differences between DNA sequences

Primavera ⭐ 25

🌸 Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.

teemi: A Python package for reproducible and FAIR microbial strain construction. Simulate the entire dbtl-cycle, generate genetic parts, design libraries, and track samples. Open-source Python platform for workflow flexibility and automated tasks, accelerating metabolic engineering. Try teemi with our Google Colab notebooks!

Crazydoc ⭐ 22

Read DNA sequences from colourful Microsoft Word documents

Dnaweaver ⭐ 22

A route planner for DNA assembly

Caravagene ⭐ 19

🎨 Python library to plot multi-part genetic constructs

Accurate segmentation of bacterial microscope images using synthetically generated image data.

Bandwagon ⭐ 17

🎺 Plot DNA digestion band patterns with Python

Genome_collector ⭐ 17

🌠 Easily download genomes and build BLAST/Bowtie indexes in Python

Madewithbio.github.io ⭐ 16

Learn how to create with biology.

Rp2paths ⭐ 14

RetroPath2.0 to pathways

Bandwitch ⭐ 13

💫 Computer-aided DNA assembly validation and identification from restriction digests.

Core library and basic plug-ins for the Amyris Genotype Specification Language (GSL) compiler.

Batch domestication of genetic parts with Python

Snapgenereader ⭐ 11

👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord.

🏖️ The EGF Collection of Useful Bio Apps - Web demos of EGF software

🐾 DNA overhang misannealing data for Python

Biotech Resources ⭐ 8

Resources for learning Biotechnology, Biology, Synthetic Biology, Genomic and Bioinformatic

Software for predicting translation initiation rates in bacteria

Goldenhinges ⭐ 8

🔗 Short overhangs design for DNA assembly

How To Synbio ⭐ 8

The resources I always recommend to new synthetic biologists.

✂️ Design compact restriction sites arrays (python utility)

👉 EGF Design and Build, the Foundry's DNA design ordering portal

Multi Stylegan ⭐ 7

Official and maintained implementation of the paper "Multi-StyleGAN: Towards Image-Based Simulation of Time-Lapse Live-Cell Microscopy" [MICCAI 2021].

Advancesyntoolkit ⭐ 7

Toolkit for Modelling and Simulation of Gene Expressions and Metabolism

Synbiohub3 ⭐ 7

Web application enabling users and software to browse, upload, and share synthetic biology designs. This repository is a redesign of the original SynBioHub using React and Spring Boot.

Tisigner Reactjs ⭐ 6

TISIGNER: Unleash the power of synthetic biology

Suite of tools that work on rpSBML format

Retropath2 Wrapper ⭐ 6

Python wrapper for Retropath2.0 Knime workflow

Sbol Visual Css ⭐ 6

➰ Draw genetic elements with HTML & CSS

Egf Shared Documents ⭐ 6

📚 Shared slideshows, courses, etc. from the EGF

Myersresearchgroup.github.io ⭐ 5

Myers Research Group's official webpage

A LaTeX package for drawing genetic construct pictograms using TikZ.

Kappagate ⭐ 5

🔮 Predict DNA assembly clone validity rates - powered by Kappa

Constellation Js ⭐ 5

Library for combinatorially specifying, constraining, and exploring genetic design spaces.

Genotype Specification Language command-line compiler application.

Sbol Validator ⭐ 5

A web application to validate SBOL files

1-54 of 54 search results

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