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Search results for python structural variation
python
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structural-variation
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23 search results found
Sniffles
⭐
479
Structural variation caller using third generation sequencing
Cutesv
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204
Long read based human genomic structural variation detection with cuteSV
Gatk Sv
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148
A structural variation pipeline for short-read sequencing
Pipeline Structural Variation
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87
Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data
Svtools
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79
Tools for processing and analyzing structural variants.
Princess
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74
Mavis
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65
Merging, Annotation, Validation, and Illustration of Structural variants
Sv2
⭐
50
Support Vector Structural Variation Genotyper
Pypgx
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49
A Python package for pharmacogenomics (PGx) research
Agfusion
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46
Python package to annotate and visualize gene fusions.
Circle Map
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39
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Advntr
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35
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
Arcsv
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19
Complex structural variant detection from WGS data
Kgwasflow
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19
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
Duet
⭐
16
SNP-Assisted SV Calling and Phasing Using ONT
Icallsv
⭐
16
A Framework to call Structural Variants from NGS based datasets
Deepsvp
⭐
10
Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity
Iannotatesv
⭐
10
iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Generation DNA sequencing data.
Svsim
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7
Simulation toolbox for structural variations.
Nucbreak
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6
Location of structural errors in a genome assembly and structural variations between a pair of genomes
Sv Pop
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6
Upscaling SV detection to a multi-population level.
Structome
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6
Toolbox development for structural variations within Irys data retrieved from the BioNano Genomics nick-labeling protocols.
Mamnet
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6
MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.
Haplotype Diversity
⭐
5
This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato breeding“
Firstsv
⭐
5
Fast and Accurate Approach of Structural Variations Detection for Short DNA fragments
Hmcnc
⭐
5
Hidden Markov Model based Copy number caller
Svjedi Graph
⭐
5
SV genotyper for long reads with a variation graph
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