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Search results for python structural biology
python
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structural-biology
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32 search results found
Graphein
⭐
932
Protein Graph Library
Molecularnodes
⭐
729
Toolbox for molecular animations in Blender, powered by Geometry Nodes.
Biotite
⭐
515
A comprehensive library for computational molecular biology
Pdb Tools
⭐
319
A dependency-free cross-platform swiss army knife for PDB files.
Sidechainnet
⭐
256
An all-atom protein structure dataset for machine learning.
Lightdock
⭐
234
Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
Atomium
⭐
92
Python macromolecular parsing (with .pdb/.cif/.mmtf parsing and production)
Pensa
⭐
77
PENSA - a collection of python methods for exploratory analysis and comparison of biomolecular conformational ensembles.
Imp
⭐
64
The Integrative Modeling Platform
Equifold
⭐
59
Official code repository for EquiFold
Ipymol
⭐
47
Control PyMOL sessions via IPython
Haddock Tools
⭐
41
Set of useful HADDOCK utility scripts
Freesasa Python
⭐
39
FreeSASA Python Module
Packman
⭐
28
PACKMAN: PACKing and Motion ANalysis
Mdciao
⭐
26
mdciao: Analysis of Molecular Dynamics Simulations Using Residue Neighborhoods
Deepict
⭐
24
Pipeline for the automatic detection and segmentation of particles and cellular structures in 3D Cryo-ET data, based on deep learning (convolutional neural networks).
Deeprank2
⭐
14
An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.
Serialfib
⭐
14
A Modular Platform for Streamlining Automated Cryo-FIB Workflows
Respre
⭐
13
ResPRE is an algorithm for protein residue-residue contact-map prediction
Schrodinger_utils
⭐
12
Various integrations to the Schrodinger ecosystem. With major interest on analysis tools for Molecular Dynamics simulations run with Desmond.
Pmi
⭐
12
Python Modeling Interface
Isambard
⭐
11
Intelligent System for Analysis, Model Building And Rational Design of biomolecules.
Zincbinddb
⭐
10
The database and API backend for ZincBind - the database of zinc binding sites
Bionoinet
⭐
9
BionoiNet is a deep learning-based software to classify ligand-binding sites.
Teaching Ibioic Intro To Bioinformatics
⭐
9
Course materials for the IBioIC Introduction to Bioinformatics training course
Pymissense
⭐
9
PyMissense creates the pathogenicity plot and modified pdb as shown in the AlphaMissense paper for custom proteins.
Hydroid
⭐
7
Python package for analyzing hydroxyl-radical footprinting experiments of DNA-protein complexes
Rmf
⭐
6
The library to support reading and writing of RMF files.
Gdock
⭐
6
Protein-Protein Docking using Genetic Algorithm
Rnaglib
⭐
6
Datasets and analysis tools for RNA 3D and 2.5D structures.
Hole2 Mdakit
⭐
5
An MDAKit implementing a Python interface for the HOLE program.
Ctfsimulation
⭐
5
A CTF Simulation Web App
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