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Search results for python reproducible research
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reproducible-research
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121 search results found
Metaflow
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7,524
🚀 Build and manage real-life ML, AI, and data science projects with ease!
Knowledge Repo
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5,344
A next-generation curated knowledge sharing platform for data scientists and other technical professions.
Pytorch Vae
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5,292
A Collection of Variational Autoencoders (VAE) in PyTorch.
Sacred
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4,152
Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
Evalai
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1,621
☁️ 🚀 📊 📈 Evaluating state of the art in AI
Benchmark_vae
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1,597
Unifying Variational Autoencoder (VAE) implementations in Pytorch (NeurIPS 2022)
Itk
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1,306
Insight Toolkit (ITK) -- Official Repository. ITK builds on a proven, spatially-oriented architecture for processing, segmentation, and registration of scientific images in two, three, or more dimensions.
Recsys2019_deeplearning_evaluation
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871
This is the repository of our article published in RecSys 2019 "Are We Really Making Much Progress? A Worrying Analysis of Recent Neural Recommendation Approaches" and of several follow-up studies.
Torch Fidelity
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820
High-fidelity performance metrics for generative models in PyTorch
Kge
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684
LibKGE - A knowledge graph embedding library for reproducible research
Disentangling Vae
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668
Experiments for understanding disentanglement in VAE latent representations
Axelrod
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632
A research tool for the Iterated Prisoner's Dilemma
Pycil
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613
PyCIL: A Python Toolbox for Class-Incremental Learning
Itkwidgets
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571
An elegant Python interface for visualization on the web platform to interactively generate insights into multidimensional images, point sets, and geometry.
Labnotebook
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528
LabNotebook is a tool that allows you to flexibly monitor, record, save, and query all your machine learning experiments.
Fullsubnet
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443
PyTorch implementation of "FullSubNet: A Full-Band and Sub-Band Fusion Model for Real-Time Single-Channel Speech Enhancement."
Facil
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425
Framework for Analysis of Class-Incremental Learning with 12 state-of-the-art methods and 3 baselines.
Recipy
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412
Effortless method to record provenance in Python
Pweave
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362
Pweave is a scientific report generator and a literate programming tool for Python. It can capture the results and plots from data analysis and works well with numpy, scipy and matplotlib.
Codebraid
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343
Live code in Pandoc Markdown
Reprozip
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286
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a frequently-used common denominator in computational science.
Canvasxpress
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282
CanvasXpress: A JavaScript Library for Data Analytics with Full Audit Trail Capabilities.
Awesome Reproducible Research
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282
A curated list of reproducible research case studies, projects, tutorials, and media
Pynwb
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161
A Python API for working with Neurodata stored in the NWB Format
Example Get Started
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160
Get started DVC project
Grand Challenge.org
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156
A platform for end-to-end development of machine learning solutions in biomedical imaging
Steppy
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134
Lightweight, Python library for fast and reproducible experimentation 🔬
Lamda Pilot
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134
🎉 PILOT: A Pre-trained Model-Based Continual Learning Toolbox
Seq2science
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132
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Econ Project Templates
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128
Templates for reproducible economics projects
Reana
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114
REANA: Reusable research data analysis platform
Everware
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111
Everware is about re-useable science, it allows people to jump right in to your research code.
Enmf
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109
This is our implementation of ENMF: Efficient Neural Matrix Factorization (TOIS. 38, 2020). This also provides a fair evaluation of existing state-of-the-art recommendation models.
Zoo
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103
Reference implementations of popular Binarized Neural Networks
Hash Embeddings
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93
PyTorch implementation of Hash Embeddings (NIPS 2017). Submission to the NIPS Implementation Challenge.
Pytask
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92
pytask is a workflow management system that facilitates reproducible data analyses.
Projectweek
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71
Website for NA-MIC Project Weeks
Ck Env
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70
CK repository with components and automation actions to enable portable workflows across diverse platforms including Linux, Windows, MacOS and Android. It includes software detection plugins and meta packages (code, data sets, models, scripts, etc) with the possibility of multiple versions to co-exist in a user or system environment.
Nixml
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66
NIX + YAML for easy to use reproducible environments
Dmipy
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64
The open source toolbox for reproducible diffusion MRI-based microstructure estimation
Biosimspace
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64
Code and resources for the EPSRC BioSimSpace project.
Itkpythonpackage
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59
A setup script to generate ITK Python Wheels
Chembl Downloader
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55
Write reproducible code for getting and processing ChEMBL
Benchpress
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52
A Snakemake workflow to run and benchmark structure learning (a.k.a. causal discovery) algorithms for probabilistic graphical models.
Itksphinxexamples
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50
Cookbook examples for the Insight Toolkit documented with Sphinx
Biosimspace
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48
An interoperable Python framework for biomolecular simulation.
Moai
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47
moai is a PyTorch-based AI Model Development Kit (MDK) created to improve data-driven model workflows, design and reproducibility.
Research Software Directory
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44
The Research Software Directory is a content management system that is tailored to software.
Reproducible Audio Research
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43
List of Reproducible Audio Research Papers
Analysispreservation.cern.ch
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42
Source code for the CERN Analysis Preservation portal
Genepattern Notebook
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41
Platform for integrating genomic analysis with Jupyter Notebooks.
Microbiomehd
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40
Cross-disease comparison of case-control gut microbiome studies
Testipynb
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39
unit-testing for a collection of jupyter notebooks using nbconvert
Openscope_databook
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39
OpenScope databook: a collaborative, versioned, data-centric collection of foundational analyses for reproducible systems neuroscience 🐁🧠🔬🖥️📈
Ck Analytics
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35
Collective Knowledge repository with actions to unify the access to different predictive analytics engines (scipy, R, DNN) from software, command line and web-services via CK JSON API:
Npf
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34
Network Performance Framework: easy-to-use experiment manager with automated testing, result collection, and graphing
Repro
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33
Repro is a library for easily running code from published papers via Docker.
Example Get Started Experiments
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33
Get started DVC project
Pystow
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31
👜 Easily pick a place to store data for your Python code.
Enos
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30
Experimental eNvironment for OpenStack 🐒
Polyaxon Quick Start
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29
A quick start project for polyaxon
Scipy Tutorial 2014
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28
Tutorial on reproducible research practices at SciPy 2014
Wfcommons
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28
WfCommons: A Framework for Enabling Scientific Workflow Research and Development
Vtkpythonpackage
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27
A setup script to generate VTK Python Wheels
Ukbrest
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27
ukbREST: efficient and streamlined data access for reproducible research of large biobanks
Drugbank_downloader
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27
Don't worry about DrugBank licensing - write code that knows how to download it automatically
Reskit
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26
A library for creating and curating reproducible pipelines for scientific and industrial machine learning
Reproduce Ck Paper
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24
Shared artifacts in the Collective Knowledge Format as a proof-of-concept to reproduce our recent Collective Mind- and Collective Knowledge-related papers
Hash Grid Encoding
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24
Pure PyTorch implementation of Nvidia's hash grid encoding: https://nvlabs.github.io/instant-ngp/
Umls_downloader
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23
Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically
Stattag
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23
Windows version of StatTag
Us Rawdata Sda
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23
A Deep Learning Approach to Ultrasound Image Recovery
Reproducibilty Challenge Ecanet
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22
Unofficial Implementation of ECANets (CVPR 2020) for the Reproducibility Challenge 2020.
Kervolution
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19
Kervolution implementation using TF2.0
Nwb_hackathons
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19
Repository for collecting materials from nwb hackathons
Colrev
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19
CoLRev: An open-source environment for collaborative reviews
Tagstore
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18
a research software; a fun way of storing files & folders on your local disk drive; tagging
Language Weave
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17
Atom syntax highlighting for Weave.jl and Pweave documents. Currently supports markdown input formats.
Papers As Modules
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17
Software Papers as Software Modules: Towards a Culture of Reusable Results
Cookiecutter Reproducible Research
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16
A cookiecutter template for reproducible research projects using Python, Snakemake, and Pandoc.
Publications
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16
IMS Machine Learning Lab publications.
Repsep
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14
Reproducible Self-Publishing - Demo Publications in the Most Common Formats
Snakemake Wrappers
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14
🐍 Snakemake wrappers for bioinformatics.
Renv
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14
Creating virtual environments for R.
Website
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13
JupyterBook for SnowEx Hackweek 2021
Awflow
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13
Reproducible research and reusable acyclic workflows in Python. Execute code on HPC systems as if you executed them on your personal computer!
Site
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13
Public website for the "Collaborative and Reproducible Data Science" course at UC Berkeley (Stat 159/259, Spring 2022 term).
Rcnn
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12
Recurrent Covolutional Neual Network implementation in TF2.0
Exprec
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12
Exprec records your experiments so you can compare different runs and easily reproduce results
R10e Ds Py
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12
Reproducible Data Science in Python (SciPy 2019 Tutorial)
Arete
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12
AMR/VF LGT focused bacterial genomics analysis workflow
Pymake
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12
An experiment control system for reproducible research
Reproducibility News
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12
Currated reproducibility news displayed on reproducibility.org
Unmap
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11
Unmap data from a pseudocolor image, with or without knowing the colormap.
Solar And Wind Potentials
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10
Estimation of solar and wind power generation potentials in Europe.
Reproserver
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10
A web application reproducing ReproZip packages in the cloud.
Youtube Engagement
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9
Code and Data for paper: Beyond Views: Measuring and Predicting Engagement in Online Videos (ICWSM '18)
35_methods_miccai_2017
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9
Code for MICCAI 2017 paper
Talk Runapp Quarto 2022
⭐
9
Possibility For Electricity Autarky
⭐
9
Is your European region able to provide itself with 100% renewable electricity?
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