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Search results for python pubmed
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python
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32 search results found
Findpapers
⭐
164
Findpapers: A tool for helping researchers who are looking for related works
Paperscraper
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128
Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.
Nalaf
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112
NLP framework in python for entity recognition and relationship extraction
Easy Entrez
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54
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
Pubtator
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39
Retrieve and process PubTator annotations
Pubrunner
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29
A framework for keeping biomedical text mining result up-to-date
Pmidcite
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24
Turbocharge a PubMed literature search using citation counts and data from the NIH
Scrappaper
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24
A web scrapping method to extract journal information from PubMed and Google Scholar using Python.
Pubmedflow
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23
Data Collection API for pubmed
Tychos Python
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21
Python library for the Tychos API. Connect live data to AI without managing pipelines
Pypubmed
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20
Toolkits for NCBI Pubmed
Pubmed2pdf
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16
A Python package to download full article PDFs from OA publications
Pubmex
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15
get full paper names for downloaded publications automatically
Pubmed
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15
Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.
Science Citation Knowledge Extractor
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13
A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that cite them
Pypergrabber
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13
Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.
Pubgpt
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12
Extract relevant informations in PubMed papers in a simple way.
Nosql Biosets
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12
index and query scripts for free reference bioinformatics datasets
Pubmed2doc
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11
Write PubMed search results with two display options (citation or listview) to PDF or Word
Beagletm
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11
A text mining tool for developing visual and interactive relationship networks from PubMed article information.
Phenotypexpression
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11
Subclassification of disease states based on the intersection of literature and expression
Biotext
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11
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
Meddistant19
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8
MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)
Gene Hints
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8
Discoverability for gene search 🧬 🔍
Rcapi
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7
Rich Context API integrations for federating metadata discovery and exchange across multiple scholarly infrastructure providers
Pubmedsoso
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7
一个批量下载pubmed免费文献的python小工具
Biorxivcurator
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7
Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.
Pubmed
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6
自动批量下载pubmed文章
Pubmed Bibtex
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6
Generate BibTeX Entries for PubMed Publications
Hidden Figures
⭐
5
A pipeline for inferring gender for acknowledged individuals in scientific literature on a massive scale
Godseye
⭐
5
Monitor biomedical trends visually across ALL of PubMed + bioRxiv
Modulector
⭐
5
An open platform which provides information about miRNAs and genes from different popular databases
Clusterduck
⭐
5
Disease Clustering from Literature Based on Minimal Training Data
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