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Search results for pubmed
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63 search results found
Biosentvec
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501
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
Bluebert
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485
BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).
Easypubmed
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268
EasyPubMed is an extension to make new PubMed easy to use
I Librarian Free
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177
I, Librarian - open-source version of a PDF managing SaaS.
Findpapers
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164
Findpapers: A tool for helping researchers who are looking for related works
Paperscraper
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128
Tools to scrape publication metadata from pubmed, arxiv, medrxiv and chemrxiv.
Nalaf
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112
NLP framework in python for entity recognition and relationship extraction
Biblio Glutton
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95
A high performance bibliographic information service
Scifive
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62
SciFive: a text-text transformer model for biomedical literature
Easy Entrez
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54
Retrieve PubMed articles, text-mining annotations, or molecular data from >35 Entrez databases via easy to use Python package - built on top of Entrez E-utilities API.
Adjutant
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49
Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents
Pubtator
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39
Retrieve and process PubTator annotations
Reciter
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39
ReCiter: an enterprise open source author disambiguation system for academic institutions
Pubrunner
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29
A framework for keeping biomedical text mining result up-to-date
Europepmc
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25
R Interface to Europe PMC RESTful Web Service
Pubtrends Review
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25
Automatic generation of reviews of scientific papers
Pmidcite
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24
Turbocharge a PubMed literature search using citation counts and data from the NIH
Scrappaper
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24
A web scrapping method to extract journal information from PubMed and Google Scholar using Python.
Pubmedflow
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23
Data Collection API for pubmed
Pubtrends
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23
Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers
Tychos Python
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21
Python library for the Tychos API. Connect live data to AI without managing pipelines
Pypubmed
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20
Toolkits for NCBI Pubmed
Tychos Node
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19
Node.js library for the Tychos API. Connect live data to AI without managing pipelines.
Textmining
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17
Sample code and explanations for doing basic text mining tasks in R
Pubmed2pdf
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16
A Python package to download full article PDFs from OA publications
Pubmex
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15
get full paper names for downloaded publications automatically
Pubmed
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15
Get literature information via PubMed ID, such as the author, title, journal_name, pub_date and so on.
Gendergapcode
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14
Code used to extract and analyse gender data from PubMed and arXiv in 2018 PLOS Biol paper
Pypergrabber
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13
Fetches PubMed article IDs (PMIDs) from email inbox, then crawls PubMed, Google Scholar and Sci-Hub for respective PDF files.
Science Citation Knowledge Extractor
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13
A web tool that helps biomedical researchers understand how their work is being used by others, by analyzing the content in papers that cite them
Biodex
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12
BioDEX: Large-Scale Biomedical Adverse Drug Event Extraction for Real-World Pharmacovigilance.
Nosql Biosets
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12
index and query scripts for free reference bioinformatics datasets
Scipamato
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12
Scientific Paper Management Tool
Pubgpt
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12
Extract relevant informations in PubMed papers in a simple way.
Entrez Rs
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12
A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.
Phenotypexpression
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11
Subclassification of disease states based on the intersection of literature and expression
Biotext
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11
Get a nicely-chunked local copy of the biomedical literature (to use for other projects)!
Beagletm
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11
A text mining tool for developing visual and interactive relationship networks from PubMed article information.
Medline
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11
Computing term cooccurrence in MEDLINE
Pubmed2doc
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11
Write PubMed search results with two display options (citation or listview) to PDF or Word
Dataclysm
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10
Pull high-quality, efficient embeddings for PubMed, arXiv and Wikipedia from Huggingface and use for local LLM inference/Retrieval Augmented Generation (RAG)
Delays
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8
Trends in scientific publishing delays
Meddistant19
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8
MedDistant19: Towards an Accurate Benchmark for Broad-Coverage Biomedical Relation Extraction (COLING 2022)
Gene Hints
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8
Discoverability for gene search 🧬 🔍
Biorxivcurator
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7
Batch scripts curating BioRxiv and PubMed articles by using Altmetric score.
Iscb Diversity
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7
Analyzing diversity of ISCB keynote speakers & fellows compared to the field of bioinformatics
Pubmedxml
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7
Parse PubMed XML into a data frame in R
Rcapi
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7
Rich Context API integrations for federating metadata discovery and exchange across multiple scholarly infrastructure providers
Pubmedsoso
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7
一个批量下载pubmed免费文献的python小工具
Groove
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7
Query analysis pipeline framework
Pubfetcher
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6
A Java command-line tool and library to download and store publications with metadata by combining content from various online resources
Pubmed
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6
自动批量下载pubmed文章
Pubmed Bibtex
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6
Generate BibTeX Entries for PubMed Publications
Rbibutils
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5
Convert bibliography files between various formats, including BibTeX, BibLaTeX, PubMed, RIS, and Bibentry. This is an R port of the bibutils utilities plus R manipulation of bibiliography objects.
Plugin Quickstatements
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5
Citation.js plugin to output QuickStatements
Modulector
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5
An open platform which provides information about miRNAs and genes from different popular databases
Pubmed Retrieval Service
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5
A PubMed retrieval service written in Go
Clusterduck
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5
Disease Clustering from Literature Based on Minimal Training Data
Godseye
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5
Monitor biomedical trends visually across ALL of PubMed + bioRxiv
Hidden Figures
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5
A pipeline for inferring gender for acknowledged individuals in scientific literature on a massive scale
Pmc Downloader
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5
Downloads full-text PDFs (or any other soruces) from PubmedCentral OA articles
Publicationdataextractor
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5
Extract Research Publication data from any external API into a simple common structure
Reciter Publication Manager
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5
ReCiter Publication Manager - a user interface for providing feedback on articles
1-63 of 63 search results
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