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Search results for python pathology
pathology
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python
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29 search results found
Clam
⭐
786
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Ncrf
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731
Cancer metastasis detection with neural conditional random field (NCRF)
Pathml
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341
Tools for computational pathology
Histolab
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315
Library for Digital Pathology Image Processing
Pcam
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297
The PatchCamelyon (PCam) deep learning classification benchmark.
Histocartography
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207
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
Slideflow
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193
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Nucleisegmentation
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152
cGAN-based Multi Organ Nuclei Segmentation
Deepliif
⭐
126
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23]
Toad
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94
AI-based pathology predicts origins for cancers of unknown primary - Nature
Monai Deploy
⭐
87
MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.
Sish
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72
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Pathology Whole Slide Data
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69
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Plip
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67
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI. PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.
Patch Gcn
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51
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
Pyslide
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45
Digital Pathology Whole Slide Image Analysis Toolbox
Wsinfer
⭐
43
🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
Tissueloc
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39
Whole Slide Digital Pathology Image Tissue Localization
Mctsegmentation
⭐
35
Deep-Learning for Tidemark Segmentation in Human Osteochondral Tissues Imaged with Micro-computed Tomography
Digipathos
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32
Brazilian Agricultural Research Corporation (EMBRAPA) fully annotated dataset for plant diseases. Plug and play installation over PiP.
Re Stained_wsis_registration
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25
Re-stained whole slide image alignment
Biscuit
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18
Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding
Im4mec
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17
Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometrial cancer from haematoxylin and eosin-stained whole-slide images: a combined analysis of the PORTEC randomised trials and clinical cohorts'.
Crane
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14
Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
Histofl
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11
Federated Learning for Computational Pathology - Medical Image Analysis
Labelslide
⭐
10
LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)
Histoprep
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9
Preprocessing module for large histological images
Graph V Net
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9
A Hierarchical Graph V-Net with Semi-supervised Pre-training for Breast Cancer Histology Image Classification" (IEEE TMI)
Pymut
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6
Machine learning methods for the prediction of pathology in protein mutations, as in the PMut predictor.
Pricai18_mvf Cascnn
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6
The implementation of our pricai18 paper "Multiple Visual Fields Cascaded Convolutional Neural Network for Breast Cancer Detection."
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