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Search results for pathology
pathology
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44 search results found
Qupath
⭐
934
QuPath - Bioimage analysis & digital pathology
Clam
⭐
786
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Ncrf
⭐
731
Cancer metastasis detection with neural conditional random field (NCRF)
Openslide
⭐
365
C library for reading virtual slide images
Pathml
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341
Tools for computational pathology
Histolab
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315
Library for Digital Pathology Image Processing
Pcam
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297
The PatchCamelyon (PCam) deep learning classification benchmark.
Histocartography
⭐
207
A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in computational pathology.
Slideflow
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193
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
Nucleisegmentation
⭐
152
cGAN-based Multi Organ Nuclei Segmentation
Pathomicfusion
⭐
148
Fusing Histology and Genomics via Deep Learning - IEEE TMI
Deepliif
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126
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23]
Toad
⭐
94
AI-based pathology predicts origins for cancers of unknown primary - Nature
Monai Deploy
⭐
87
MONAI Deploy aims to become the de-facto standard for developing, packaging, testing, deploying and running medical AI applications in clinical production.
Sish
⭐
72
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
Pathology Whole Slide Data
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69
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Plip
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67
Pathology Language and Image Pre-Training (PLIP) is the first vision and language foundation model for Pathology AI. PLIP is a large-scale pre-trained model that can be used to extract visual and language features from pathology images and text description. The model is a fine-tuned version of the original CLIP model.
Patch Gcn
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51
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
Raccoon
⭐
45
Raccoon is a NoSQL-based medical image archive for managing the DICOM images.
Pyslide
⭐
45
Digital Pathology Whole Slide Image Analysis Toolbox
Wsinfer
⭐
43
🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
Tissueloc
⭐
39
Whole Slide Digital Pathology Image Tissue Localization
Cora Docs
⭐
36
CoRA Docs
Mctsegmentation
⭐
35
Deep-Learning for Tidemark Segmentation in Human Osteochondral Tissues Imaged with Micro-computed Tomography
Digipathos
⭐
32
Brazilian Agricultural Research Corporation (EMBRAPA) fully annotated dataset for plant diseases. Plug and play installation over PiP.
Stainlib
⭐
25
Python 3 library for the augmentation & normalization of H&E images
Re Stained_wsis_registration
⭐
25
Re-stained whole slide image alignment
Biscuit
⭐
18
Bayesian Inference of Slide-level Confidence via Uncertainty Index Thresholding
Plaquebox Paper
⭐
18
Repo for Tang et al, bioRxiv 454793 (2018)
Im4mec
⭐
17
Code for the im4MEC model described in the paper 'Interpretable deep learning model to predict the molecular classification of endometrial cancer from haematoxylin and eosin-stained whole-slide images: a combined analysis of the PORTEC randomised trials and clinical cohorts'.
Crane
⭐
14
Deep learning enabled assessment of cardiac allograft rejection from endomyocardial biopsies- Nature Medicine
Histofl
⭐
11
Federated Learning for Computational Pathology - Medical Image Analysis
Wsi Preprocessing
⭐
10
Simple library for preprocessing histopathological whole-slide images (WSI) into tiles (a.k.a. patches) towards deep learning
Labelslide
⭐
10
LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)
Slideslicer
⭐
9
a toolbox for manipulation of digital pathology slides and annotations
Graph V Net
⭐
9
A Hierarchical Graph V-Net with Semi-supervised Pre-training for Breast Cancer Histology Image Classification" (IEEE TMI)
Histoprep
⭐
9
Preprocessing module for large histological images
Patolojiatlasi.github.io
⭐
8
Patoloji Atlası
Simple_wsi_viewer
⭐
7
A simple web application for for viewing and navigating pathology whole-slide-images in your browser.
Dlbcl Morph
⭐
7
DLBCL-Morph dataset containing high resolution tissue microarray scans from 209 DLBCL cases, with geometric features computed using deep learning
Pricai18_mvf Cascnn
⭐
6
The implementation of our pricai18 paper "Multiple Visual Fields Cascaded Convolutional Neural Network for Breast Cancer Detection."
Pymut
⭐
6
Machine learning methods for the prediction of pathology in protein mutations, as in the PMut predictor.
Parapathology
⭐
6
My Notes related to Pathology and ParaPathology
Spia To Fhir
⭐
5
A Maven plugin for converting terminology from the Standards for Pathology Informatics in Australia (SPIA) into a set of FHIR terminology resources.
1-44 of 44 search results
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