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81 search results found

Open Semantic Search ⭐ 741

Open Source research tool to search, browse, analyze and explore large document collections by Semantic Search Engine and Open Source Text Mining & Text Analytics platform (Integrates ETL for document processing, OCR for images & PDF, named entity recognition for persons, organizations & locations, metadata management by thesaurus & ontologies, search user interface & search apps for fulltext search, faceted search & knowledge graph)

Pygraft ⭐ 553

Configurable Generation of Synthetic Schemas and Knowledge Graphs at Your Fingertips

Osintbuddy ⭐ 498

Node graphs, OSINT data mining, and plugins. Connect unstructured and public data for transformative insights

Semantic Python Overview ⭐ 456

(subjective) overview of projects which are related both to python and semantic technologies (RDF, OWL, Reasoning, ...)

Holmes Extractor ⭐ 370

Information extraction from English and German texts based on predicate logic

Digitalbuildings ⭐ 340

Digital Buildings (ontology and SDK) currently being used by Google internally to manage our own buildings.

Wikidata ⭐ 292

Wikidata client library for Python

A Python frontend to (Open Biomedical) Ontologies.

Ontospy ⭐ 212

Python library and command-line interface for inspecting and visualizing RDF models aka ontologies.

Followthemoney ⭐ 188

Data model and processing tools for investigative entity data

The core repository for the FOODON food ontology project. This holds the key classes of the ontology; larger files and the results of text-mining projects will be stored in other repos.

Biocypher ⭐ 160

A unifying framework for biomedical research knowledge graphs

Obofoundry.github.io ⭐ 140

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Holmes Extractor ⭐ 128

Information extraction from English and German texts based on predicate logic

Deeponto ⭐ 119

A package for ontology engineering with deep learning and language models.

Pheknowlator ⭐ 116

PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

Ontobio ⭐ 114

python library for working with ontologies and ontology associations

OBO-formatted ontologies → networkx (Python 3)

Ontology ⭐ 94

Repository for the Open Energy Ontology (OEO)

Ontology Access Kit ⭐ 89

Ontology Access Kit: A python library and command line application for working with ontologies

Telemeta ⭐ 88

Collaborative content management system for musicology

Daf Ontologie Vocabolari Controllati ⭐ 81

Elenco di ontologie e vocabolari controllati. Per maggiori informazioni, si veda il readme principale e quello di singoli vocabolari/ontologie, ove presente, e la seguente documentazione

Download_audioset ⭐ 81

📁 This repo makes it easy to download the raw audio files from AudioSet (32.45 GB, 632 classes).

Ontology Visualization ⭐ 78

A simple ontology and RDF visualization tool.

Ontoology ⭐ 69

Online tool to automatically generate documentation and evaluation for Ontologies hosted on GitHub

The Ontology for Biomedical Investigations

Purl.obolibrary.org ⭐ 67

A system for managing OBO PURLs

Nxontology ⭐ 59

NetworkX-based Python library for representing ontologies

Weakly supervised medical named entity classification

Artificial Intelligence Knowledge Information Framework

Biolink Api ⭐ 53

API for linked biological knowledge

📛 A Python package for using ontologies, terminologies, and biomedical nomenclatures

A graphical editor for the specification and visualization of Graphol ontologies

Food Categories Classification ⭐ 46

This repository contains the dataset and the source code for the classification of food categories from meal images.

Function prediction using a deep ontology-aware classifier

Semantic Bot ⭐ 44

A Semi-Automatic Tool to generate RDF mappings for Opendatasoft's datasets

mOWL: Machine Learning library with Ontologies

D3fend Ontology ⭐ 43

This repository holds the necessary content to produce the D3FEND ontology distribution.

Metasra Pipeline ⭐ 42

MetaSRA: normalized sample-specific metadata for the Sequence Read Archive

Data transformation framework for LinkML data models

Nidm Specs ⭐ 34

Neuroimaging Data Model (NIDM): describing neuroimaging data and provenance

Treetime ⭐ 33

TreeTime is a data organisation, management and analysis tool. A tree is a hierarchical structure that arranges information in units and sub-units. TreeTime uses linked trees (one data item can be part of different distinct trees) to store and organise any general purpose data.

Ontology Enhancement Proposal

Semantic Sql ⭐ 32

SQL and SQLite builds of OWL ontologies

Go Annotation ⭐ 29

This repository hosts the tracker for issues pertaining to GO annotations.

Entropy-controlled contexts in Python

Emmontopy ⭐ 27

Library for representing and working with ontologies in Python

BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction

Ncbitaxon ⭐ 24

Build for NCBITaxon

Ontolearn ⭐ 23

Ontolearn is an open-source software library for explainable structured machine learning in Python. It learns OWL class expressions from positive and negative examples.

Fastobo Py ⭐ 23

Faultless AST for Open Biomedical Ontologies in Python.

Clinical_informatics_umls ⭐ 22

An exploratory, tutorial and analytical view of the Unified Medical Language System (UMLS) & the software/technologies provided via being a free UMLS license holder. This repo will subset 2021AB UMLS native release, introduce/build upon UMLS provided tools to load a configured subset into first a relational database --> MySQL, SQLite, PostgreSQL and MariaDB all covered within this repo. Next the UMLS subset which is stored in a relational DB will be queried, modeled and lastly loaded into a defi

Linguistics_problems ⭐ 22

Natural language processing in examples and games

Rare Disease Identification ⭐ 21

Rare disease identification from free-text clinical notes with ontologies and weak supervision

ontology editor built on Owlready2

A graphical editor for the specification and visualization of Graphol ontologies

Multi Drug Embedding ⭐ 17

Method for drug repurposing from knowledge graphs and literature

A Python library to work with, analyze, filter and inspect the Human Phenotype Ontology

The OntoUML Language Documentation.

Convert Description Logic axioms into a graph, and generate embedding representation for the nodes.

Simphony Osp ⭐ 16

A framework that aims to achieve interoperability between software such as simulation engines, databases and data repositories using a knowledge graph as the common language.

Autoprotege ⭐ 16

🔧 AutoProtégé是一个面向斯坦福大学开源本体构建工具protege而开发的python操作库，支持海量知识自动化映射和管理

Development of the Gellish Communicator reference application and tools for universal data exchange and data integration supporting Formal English and other Gellish formalized natural languages.

Ontologies ⭐ 14

The eNanoMapper ontology

A Python framework for integrating biological databases and structured data sources in Biological Expression Language (BEL)

Semantic Lossfunc ⭐ 13

Treat Different Negatives Differently: Enriching Loss Functions with Domain and Range Constraints for Link Prediction

Narwhal is a keyword and KEY NARRATIVE manager that creates language-aware classes. Because Narhwal does not use NLP it avoids complexity.

Foodbiomarkerontology ⭐ 12

🚀 Food-Biomarker Ontology defines the relationships between foods and their associated metabolites (biomarkers) through a formal ontology

Versatile Embeddings ⭐ 11

Learn Versatile Knowledge Graph Embeddings by Capturing Semantics with MASCHInE

Ontology-Based GraphQL Server Generation (OBG-gen)

Omnipy is a high level Python library for type-driven data wrangling and scalable workflow orchestration (under development)

Ontology Mapper ⭐ 10

Tool for mapping (uncontrolled) terms to ontology terms

Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity

Comptox_ai ⭐ 10

ComptoxAI - An artificial Intelligence toolkit for computational toxicology

Learning Ontologies Via Embeddings

Zebrafish Phenotype Ontology ⭐ 9

A vocabulary for describing Zebrafish Phenotypes

Movies Ontology ⭐ 9

🎥 Ontology, parser and system modeling in description logic (DL) for movies

Jabberwocky ⭐ 9

toolkit for those nonsensical ontologies

RML-Core: Main features for RDF generation with RML

Cif Ontology ⭐ 8

Basic crystallography domain ontology based on EMMO and the CIF core dictionary.

Automatic Baseball Commentary Generation Using Deeplearning ⭐ 8

Automatic Baseball Commentary Generation Using Deep Learning (SAC 2020)

Converts OWL ontologies and OBO to NetworkX Graphs

Public SNIK Ontology. An ontology of information management in hospitals.

Semanticmse ⭐ 8

Implementation query expansion in semantic meta-search engine. The resulting expansion system is called Wiki-MetaSemantik.

Nxontology Data ⭐ 8

NXOntology data: making ontologies accessible as simple JSON files

Biomedical Relation Extraction with Knowledge Graph-based Recommendations

Inteligencia Artificial ⭐ 8

Aulas e exercícios da matéria: Sistemas inteligentes (INE5633).

The MHC Restriction Ontology

Brain_data_standards_ontologies ⭐ 7

A repository for co-ordinating work on ontologies for the Brain Data Standards Project

Impatient ⭐ 6

IMPatienT🗂️: an integrated web application to digitize, process and explore multimodal patient data. Demo version deployed at: https://impatient.lbgi.fr/

Django Phenotype Ontologies ⭐ 6

Django app for parsing/loading Phenotype ontologies (HPO, MONDO, OncoTree, etc)

Yamlpyowl ⭐ 6

python based YAML-to-OWL-converter

Toponym Disambiguation Using Ontology Based Semantic Similarity ⭐ 6

Toponym Disambiguation using Ontology-based Semantic Similarity.

A library for probabilistic reasoning and belief modelling in Python.

Ols Client ⭐ 6

🎡 Unified access to OLS instances like from the EBI and TIB

OntoEA: Ontology-guided Entity Alignment via Joint Knowledge Graph Embedding @ ACL'21

Mc_mros_reasoner ⭐ 6

library for metacontrol-based self-adaptation using ontological reasoning, with wrappers for robotic systems based on ROS1 and ROS2

Ontogram - an OWL ontology diagram generator

hd bip44 python implementation support btc eth neo ont

XAO represents the anatomy and development of the African frogs Xenopus laevis and X. tropicalis.

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