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Search results for python multiple sequence alignment
multiple-sequence-alignment
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python
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13 search results found
Evodiff
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313
Generation of protein sequences and evolutionary alignments via discrete diffusion models
Neuroseed
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64
Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)
Pymsaviz
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41
MSA(Multiple Sequence Alignment) visualization python package for sequence analysis
Reveal
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39
Graph based multi genome aligner
Revisiting Plms
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31
Exploring Evolution-aware & free protein language models as protein function predictors
Dmpfold2
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19
Fast and accurate protein structure prediction
Pyfamsa
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17
Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.
Pytrimal
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15
Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
Pyspoa
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12
Python bindings to spoa
Bioinformatics Projects
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8
Several small Bioinformatics projects implementing related algorithms, including Semi-Global alignment, Multiple Sequence Alignment using Star-Alignment, and MSA using PSSM profiles considering Gaps.
Sequoya
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7
Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics
Pacrat
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5
Improving long-read barcode-variant mapping using multiple sequence alignment.
Msa_trimmer
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5
Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.
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