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Search results for multiple sequence alignment

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29 search results found

Evodiff ⭐ 313

Generation of protein sequences and evolutionary alignments via discrete diffusion models

A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

Algorithm for ultra-scale multiple sequence alignments (3M protein sequences in 5 minutes and 24 GB of RAM)

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Neuroseed ⭐ 64

Implementation of Neural Distance Embeddings for Biological Sequences (NeuroSEED) in PyTorch (NeurIPS 2021)

Mitos.jl ⭐ 64

Mutual Information Tools for protein Sequence analysis in Julia

Pymsaviz ⭐ 41

MSA(Multiple Sequence Alignment) visualization python package for sequence analysis

Scalable long read self-correction and assembly polishing with multiple sequence alignment

Graph based multi genome aligner

Revisiting Plms ⭐ 31

Exploring Evolution-aware & free protein language models as protein function predictors

Tidehunter ⭐ 22

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Msabrowser ⭐ 21

🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations

Dmpfold2 ⭐ 19

Fast and accurate protein structure prediction

Tidehunter ⭐ 17

TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain

Cython bindings and Python interface to FAMSA, an algorithm for ultra-scale multiple sequence alignments.

Pytrimal ⭐ 15

Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!

Alignmentviewer ⭐ 15

Multiple sequence alignment visualizer

Tib Filoinfo ⭐ 14

Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

React Msa Viewer ⭐ 14

React rerelease of MSAViewer

Pymuscle5 ⭐ 12

Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.

Python bindings to spoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Bioinformatics Projects ⭐ 8

Several small Bioinformatics projects implementing related algorithms, including Semi-Global alignment, Multiple Sequence Alignment using Star-Alignment, and MSA using PSSM profiles considering Gaps.

do multiple nucleotide sequence alignment fast and accurately

Solving Multiple Sequence Alignment (MSA) problems with multi-objective metaheuristics

Spot Rna2 ⭐ 7

Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learning

Cluster up to millions of peptide sequences on shared sequence motifs.

Msa_trimmer ⭐ 5

Straightforward & minimalistic removal of poorly aligned regions in sequence alignments.

Improving long-read barcode-variant mapping using multiple sequence alignment.

Related Searches

Python Multiple Sequence Alignment (10)

Bioinformatics Multiple Sequence Alignment (7)

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C Plus Plus Multiple Sequence Alignment (5)

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Javascript Multiple Sequence Alignment (3)

1-29 of 29 search results

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