Awesome Open Source
Search
Programming Languages
Languages
All Categories
Categories
About
Search results for python microbial genomics
microbial-genomics
x
python
x
16 search results found
Pycirclize
⭐
476
Circular visualization in Python (Circos Plot, Chord Diagram)
Bakta
⭐
365
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
Ppanggolin
⭐
191
Build a partitioned pangenome graph from microbial genomes
Pygenomeviz
⭐
177
A genome visualization python package for comparative genomics
Aniclustermap
⭐
38
A tool for drawing ANI clustermap between all-vs-all microbial genomes
Cogclassifier
⭐
27
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
Mmlong2
⭐
26
An all-in-one genome-centric metagenomics workflow using long reads
Treesapp
⭐
22
A Python package for gene-centric taxonomic and functional classification using phylogenetic placement
Mgcplotter
⭐
20
Microbial Genome Circular plotting tool for comparative genomics using Circos
Genegrouper
⭐
13
CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.
Phylotoast
⭐
12
Tools for phylogenetic data analysis including visualization and cluster-computing support.
Shigeifinder
⭐
9
Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies
Gbkviz
⭐
7
Easy-to-use web application for visualization and comparison of genomes in Genbank file
Gnomic
⭐
5
A grammar for describing microbial genotypes and phenotypes
Nf Ncov Voc
⭐
5
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.
Lissero
⭐
5
In silico serotype prediction for Listeria monocytogenes
Related Searches
Python Django (28,897)
Python Machine Learning (20,195)
Python Flask (17,643)
Python Deep Learning (13,092)
Python Jupyter Notebook (12,976)
Python Database (9,975)
Python Graph (6,224)
Python Classification (5,958)
Python Pipeline (4,391)
Python Visualization (3,892)
1-16 of 16 search results
Privacy
|
About
|
Terms
|
Follow Us On Twitter
Copyright 2018-2024 Awesome Open Source. All rights reserved.