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33 search results found

Pycirclize ⭐ 476

Circular visualization in Python (Circos Plot, Chord Diagram)

Rapid & standardized annotation of bacterial genomes, MAGs & plasmids

Fastani ⭐ 301

Fast Whole-Genome Similarity (ANI) Estimation

Ppanggolin ⭐ 191

Build a partitioned pangenome graph from microbial genomes

Pygenomeviz ⭐ 177

A genome visualization python package for comparative genomics

Aniclustermap ⭐ 38

A tool for drawing ANI clustermap between all-vs-all microbial genomes

From genomes to phenotypes: Traitar, the microbial trait analyzer

Micropipe ⭐ 30

A pipeline for high-quality bacterial genome construction using ONT sequencing

Nonpareil ⭐ 29

Estimate metagenomic coverage and sequence diversity

MiGA: Microbial Genomes Atlas

Bac Genomics Scripts ⭐ 28

Collection of scripts for bacterial genomics

Cogclassifier ⭐ 27

A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category

An all-in-one genome-centric metagenomics workflow using long reads

Get microbial sequence data easier and faster

Treesapp ⭐ 22

A Python package for gene-centric taxonomic and functional classification using phylogenetic placement

Assemblycomparator2 ⭐ 20

🦠📇 Compare prokaryotic genomic assemblies

Mgcplotter ⭐ 20

Microbial Genome Circular plotting tool for comparative genomics using Circos

Microbiomer ⭐ 17

A comprehensive R package for microbiome analysis.

Csbfinder ⭐ 15

A Java Desktop application with a graphical user interface for the discovery of colinear syntenic blocks across thousands microbial genomes

A comprehensive and intuitive encapsulated OO class system for analyzing bacterial pangenomes in R.

Genegrouper ⭐ 13

CLI tool for finding gene clusters in many genomes and placing them in discrete groups based on gene content similarity.

A pipeline for bioinformatics analysis of bacterial genomes

Phylotoast ⭐ 12

Tools for phylogenetic data analysis including visualization and cluster-computing support.

Ldweaver ⭐ 12

Genomewide Epistasis Analysis on Bacteria

Approximate nearest neighbor search for microbial genomes based on probminhash and HNSW

Shigeifinder ⭐ 9

Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies

Gluetools ⭐ 9

An open, platform-independent software toolkit for storage and interpretation of sequence data, implemented in Java.

Easy-to-use web application for visualization and comparison of genomes in Genbank file

Albatradis ⭐ 7

Comparative TraDIS analysis

An easy way of MLSTyping your genomes in R.

A grammar for describing microbial genotypes and phenotypes

In silico serotype prediction for Listeria monocytogenes

Nf Ncov Voc ⭐ 5

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 genomes (Variants of Concern and Variants of Interest). Workflow is developed in collaboration with COVID-MVP (https://github.com/cidgoh/COVID-MVP) which can be used to visualize the mutation profiles and functional annotations.

Related Searches

Bioinformatics Microbial Genomics (22)

Python Microbial Genomics (17)

Genome Microbial Genomics (9)

1-33 of 33 search results

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