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10 search results found

Lifelines ⭐ 2,227

Survival analysis in Python

Comparative Genomics Toolkit 3

Maximum Likelihood estimation and Simulation for Stochastic Differential Equations (Diffusions)

Busco_phylogenomics ⭐ 26

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

Phylociraptor ⭐ 23

rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference

Python+Rust implementation of the Probabilistic Principal Component Analysis model

Gauss Naive Bayes ⭐ 19

Gauss Naive Bayes in Python From Scratch.

Ancestral character reconstruction and visualisation for rooted phylogenetic trees

Detection Estimation Learning ⭐ 8

Python notebooks for my graduate class on Detection, Estimation, and Learning. Intended for in-class demonstration. Notebooks illustrate a variety of concepts, from hypothesis testing to estimation to image denoising to Kalman filtering. Feel free to use or modify for your instruction or self-study.

Maximum a posteriori Point Emitter Localization -- High-performance, parallel, robust, cross-platform localization for EMCCD and SCMOS microscopy.

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