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27 search results found

Lifelines ⭐ 2,227

Survival analysis in Python

Image-processing software for cryo-electron microscopy

Raxml Ng ⭐ 339

RAxML Next Generation: faster, easier-to-use and more flexible

Cmdstanr ⭐ 126

CmdStanR: the R interface to CmdStan

Iq Tree ⭐ 125

Efficient phylogenomic software by maximum likelihood

Comparative Genomics Toolkit 3

Maximum likelihood demultiplexing

Spatialreg ⭐ 40

spatialreg: spatial models estimation and testing

Get_phylomarkers ⭐ 39

A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concatenation approaches

Dynamic Discrete Choice ⭐ 33

Matlab package for learning to specify, compute, and estimate dynamic discrete choice models

Maximum Likelihood estimation and Simulation for Stochastic Differential Equations (Diffusions)

Busco_phylogenomics ⭐ 26

BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins

Phylociraptor ⭐ 23

rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference

Python+Rust implementation of the Probabilistic Principal Component Analysis model

R package that provides estimation methods for Gravity Models

Ancestral character reconstruction and visualisation for rooted phylogenetic trees

Gauss Naive Bayes ⭐ 19

Gauss Naive Bayes in Python From Scratch.

Amptools ⭐ 18

A utility library for performing amplitude analysis on particle physics data.

Corbinian ⭐ 14

CorBinian: A toolbox for modelling and simulating high-dimensional binary and count-data with correlations

Phylogenetic analysis of genetic data

Tib Filoinfo ⭐ 14

Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México

Treebest ⭐ 13

TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)

Switch Ssm ⭐ 11

Markov-Switching State-Space Models

Detection Estimation Learning ⭐ 8

Python notebooks for my graduate class on Detection, Estimation, and Learning. Intended for in-class demonstration. Notebooks illustrate a variety of concepts, from hypothesis testing to estimation to image denoising to Kalman filtering. Feel free to use or modify for your instruction or self-study.

Scripts for file processing and analysis in phylogenetics and phylogeography

Univariateml ⭐ 7

An R package for maximum likelihood estimation of univariate densities.

Maximum a posteriori Point Emitter Localization -- High-performance, parallel, robust, cross-platform localization for EMCCD and SCMOS microscopy.

1-27 of 27 search results

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