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A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.

Refinery Platform ⭐ 97

The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and interpretation of results at all stages of the analysis process.

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

Vitessce Python ⭐ 28

Python API and Jupyter widget for Vitessce

Higlass Server ⭐ 17

Server component for HiGlass that manages and serves tiled data

Tableschema To Template ⭐ 10

Given a Frictionless Table Schema, generate an Excel template with input validation

Ingest Validation Tools ⭐ 8

HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.

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