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Search results for gehlenborglab
gehlenborglab
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31 search results found
Upsetr
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672
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
Higlass
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304
Fast, flexible and extensible genome browser.
Viv
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245
Library for multiscale visualization of high-resolution multiplexed bioimaging data on the web. Directly renders Zarr and OME-TIFF.
Gos
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184
A declarative library for Python designed to create interactive multi-scale visualizations of genomics and epigenomics data.
Gosling.js
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152
Grammar of Scalable Linked Interactive Nucleotide Graphics
Vitessce
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124
Vitessce is a visual integration tool for exploration of spatial single-cell experiments.
Zarr.js
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113
Javascript implementation of Zarr
Refinery Platform
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97
The Refinery Platform is a data management, analysis and visualization system for bioinformatics and computational biology applications. The platforms consists of three major components: a data repository with rich metadata capabilities, a workflow engine based on the popular Galaxy system, and visualization tools to support the exploration and interpretation of results at all stages of the analysis process.
Vizarr
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89
A minimal, purely client-side program for viewing Zarr-based images with Viv & ImJoy.
Hic Data Analysis Bootcamp
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78
Workshop on measuring, analyzing, and visualizing the 3D genome with Hi-C data.
Caleydo
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57
Caleydo - Visualization for Molecular Biology
Nozzle
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55
Nozzle is a report generation toolkit for data analysis pipelines implemented in R.
Clodius
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33
Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
Vitesscer
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32
R API and htmlwidget for Vitessce
Vitessce Python
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28
Python API and Jupyter widget for Vitessce
3d Genome Processing Tutorial
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28
A 3D genome data processing tutorial for ISMB/ECCB 2017
Higlass Docker
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22
Builds a docker container wrapping higlass-server and higlass-client in nginx
Higlass Manage
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18
A utility script to manage local docker instances of HiGlass
Higlass Server
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17
Server component for HiGlass that manages and serves tiled data
Halyos
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16
Redesigning the Patient Portal Experience with SMART on FHIR.
Cistrome Explorer
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14
Interactive visual analytic tool for exploring epigenomics data w/ associated metadata, powered by HiGlass and Gosling
Portal Ui
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11
HuBMAP Data Portal front end
Tableschema To Template
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10
Given a Frictionless Table Schema, generate an Excel template with input validation
Genocat
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10
Genomic Visualization Catalog
Visualization Notebooks
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9
Jupyter Notebooks and other code for 4CE data visualizations.
Ingest Validation Tools
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8
HuBMAP data submission guidelines, and tools which check that submissions adhere to those guidelines.
Oncothreads
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8
OncoThreads longitudinal cancer genomics visualization project.
Gehlenborglab Website
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6
Code for Gehlenborg Lab website.
Higlass Multivec
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6
Multivec Tracks for Higlass
Vitessce Data
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6
Utils for loading HuBMAP data formats
Vitessce Python Tutorial
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5
Notebooks for HuBMAP tutorial session (January 2023)
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