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35 search results found

Parameterizing neural power spectra into periodic & aperiodic components.

phy: interactive visualization and manual spike sorting of large-scale ephys data

Bluepyopt ⭐ 190

Blue Brain Python Optimisation Library

Elephant ⭐ 174

Elephant is the Electrophysiology Analysis Toolkit

Neurora ⭐ 130

A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)

Spectral_connectivity ⭐ 109

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

Ecephys_spike_sorting ⭐ 93

Modules for processing extracellular electrophysiology data from Neuropixels probes

Neuropyxels ⭐ 87

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

Electrophys Feature Extraction Library

Pysiology ⭐ 54

A Python package for physyological's signals processing

Spyglass ⭐ 50

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

Combinato ⭐ 36

Automatic spike sorting, cluster visualization, spike sorting GUIs

Python tools for analysis of neurophysiology data

Neuroelectrophysiology object model and data analysis in Python.

Neuroglia ⭐ 30

a Python machine learning library for neurophysiology data

Neuroshapes ⭐ 29

Open schemas for F.A.I.R. neuroscience data

Biopeaks ⭐ 28

biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals

Neurotic ⭐ 25

Curate, visualize, annotate, and share your behavioral ephys data using Python

Phy Contrib ⭐ 24

[This repository is archived, will be deprecated after the release of phy 2.0]

Software for high density electrophysiology

A Python Library for Implementing Human-Computer Interface Experiments

Graphpype ⭐ 20

Neuropycon package of functions for electrophysiology analysis, can be used from ephypype and nipype

Ephypype ⭐ 19

Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype

Viziphant ⭐ 17

Visualization of electrophysiological data from Elephant

Multichannel time series lossless compression in pure Python based on NumPy and zlib

Analysis pipeline for electrophysiology MiV-system and simulator

SanPy is software for whole-cell current clamp analysis.

a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

Spikewrap ⭐ 8

EARS: Electrophysiology Auditory Recording System

Neural oscillation event detection and analysis

Software for cardiovascular data analysis and visualization

a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.

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