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69 search results found

EEGLAB is an open source signal processing environment for electrophysiological signals running on Matlab and developed at the SCCN/UCSD

Kilosort ⭐ 406

Fast spike sorting with drift correction for up to a thousand channels

Spikeinterface ⭐ 388

A Python-based module for creating flexible and robust spike sorting pipelines.

Brainstorm3 ⭐ 340

Brainstorm software: MEG, EEG, fNIRS, ECoG, sEEG and electrophysiology

Electrophysiologydata ⭐ 310

A list of openly available datasets in (mostly human) electrophysiology.

Parameterizing neural power spectra into periodic & aperiodic components.

phy: interactive visualization and manual spike sorting of large-scale ephys data

Bluepyopt ⭐ 190

Blue Brain Python Optimisation Library

Elephant ⭐ 174

Elephant is the Electrophysiology Analysis Toolkit

Neurora ⭐ 130

A Python Toolbox for Multimode Neural Data Representation Analysis - A Representational Analysis Toolbox for Neuroscience, including Neural Pattern Similarity (NPS), Representational Similarity Analysis (RSA), Spatiotemporal Pattern Similarity (STPS) & Inter-Subject Correlation (ISC)

Chaste - Cancer Heart And Soft Tissue Environment - main public repository.

Spectral_connectivity ⭐ 109

Frequency domain estimation and functional and directed connectivity analysis tools for electrophysiological data

Ecephys_spike_sorting ⭐ 93

Modules for processing extracellular electrophysiology data from Neuropixels probes

C++ lsl library for multi-modal time-synched data transmission over the local network

Electrophysiologysoftware ⭐ 89

A list of openly available software tools for (mostly human) electrophysiology.

Neuropyxels ⭐ 87

NeuroPyxels (npyx) is a python library built for electrophysiologists using Neuropixels electrodes. This package stems from the need of a pythonist who really did not want to transition to MATLAB to work with Neuropixels: it features a suite of core utility functions for loading, processing and plotting Neuropixels data.

pyABF is a Python package for reading electrophysiology data from Axon Binary Format (ABF) files

Cellexplorer ⭐ 81

CellExplorer is a graphical user interface, a standardized processing module and data structure for exploring and classifying single cells acquired using extracellular electrodes.

The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

Electrophys Feature Extraction Library

Pysiology ⭐ 54

A Python package for physyological's signals processing

Spyglass ⭐ 50

Neuroscience data analysis framework for reproducible research built by Loren Frank Lab at UCSF

Real-time position tracker for behavioral research

Spectravis ⭐ 38

An interactive web-based neuroscience app for analyzing task-related functional networks over time and frequency

Neuroimaging.jl ⭐ 37

Neuroimaging in Julia

Combinato ⭐ 36

Automatic spike sorting, cluster visualization, spike sorting GUIs

Acquisition Board ⭐ 35

Hardware interface for streaming up to 512 channels of neural data via USB

Python tools for analysis of neurophysiology data

Pinpoint ⭐ 32

Multi-probe trajectory planning in an intuitive 3D environment

Neuroelectrophysiology object model and data analysis in Python.

Neuroglia ⭐ 30

a Python machine learning library for neurophysiology data

Neuroshapes ⭐ 29

Open schemas for F.A.I.R. neuroscience data

Biopeaks ⭐ 28

biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals

Neurotic ⭐ 25

Curate, visualize, annotate, and share your behavioral ephys data using Python

Software for high density electrophysiology

Phy Contrib ⭐ 24

[This repository is archived, will be deprecated after the release of phy 2.0]

ONI-compatible hardware, firmware, and host APIs for advanced neuroscience experiments.

A Python Library for Implementing Human-Computer Interface Experiments

Graphpype ⭐ 20

Neuropycon package of functions for electrophysiology analysis, can be used from ephypype and nipype

Multichannel Igor Electrophysiology Suite

Ephypype ⭐ 19

Neuropycon package of functions for electrophysiology analysis, can be used from graphpype and nipype

Viziphant ⭐ 17

Visualization of electrophysiological data from Elephant

Multichannel time series lossless compression in pure Python based on NumPy and zlib

Symphony Matlab ⭐ 17

Symphony Data Acquisition System

Braintime ⭐ 14

Brain Time Toolbox: Warp electrophysiological data from clock time to brain time and analyze the dynamic neural patterns of cognitive processes.

Neurophysiological data analyses by engineers, for physiologists.

Analysis pipeline for electrophysiology MiV-system and simulator

SanPy is software for whole-cell current clamp analysis.

Braveheart ⭐ 10

BRAVEHEART: Open-source software for automated electrocardiographic and vectorcardiographic analysis

a graphical tool for generating hybrid ground-truth spiking data for evaluating spike sorting performance

Thunderbolt.jl ⭐ 9

A modular shared-memory high-performance framework for multiscale cardiac multiphysics simulations.

Spikewrap ⭐ 8

Nexus Bbp Domains ⭐ 8

BBP domains specification (schemas, vocabularies)

Software for cardiovascular data analysis and visualization

a Python toolbox for reproducible analysis and visualization of NeuroPhysiological data.

Electrocuda ⭐ 7

Robust electrophysiology tools with GPU acceleration

Pandora Matlab ⭐ 7

PANDORA is a Matlab Toolbox for analyzing neuronal electrophysiology data and constructing databases. See the Wiki for branch information.

Closed-Loop, Electrophysiology, and Optophysiology experiment simulation testbed for mesoscale neuroscience

Chronic Neuropixels ⭐ 7

CAD files for the Apollo Implant: a device for Chronic Neuropixels Implantation

Neural oscillation event detection and analysis

EARS: Electrophysiology Auditory Recording System

R package to analyse electrophysiology data acquired by Neuromatic / Igor Pro

'minis' is a software for electrophysiological data analysis. It allows you to detect and analyse spontaneous postsynaptic potetnials/currents in whole-cell patch clamp recordings and to estimate the quantal size in the central synapse.

Appredict ⭐ 6

Cardiac Action Potential Prediction (ApPredict) under drug-induced block of ion channels. This is a Chaste extension/bolt-on project.

R package to load Igor Pro waves (ibw) and experiment files (pxp) in R

Neuralanalysis ⭐ 5

Behavioural and neural analysis for Temporal (and later Spatial) tasks

Liquid Junction Potential Calculator

SORTED: a curated list of interesting science ideas and links (cognitive/neuro & data science)

A deep learning framework for synaptic event detection

1-69 of 69 search results

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