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Search results for python dna sequences

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11 search results found

Enformer Pytorch ⭐ 359

Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch

Intervene ⭐ 111

Intervene: a tool for intersection and visualization of multiple genomic region and gene sets

A python package and a set of shell commands to handle GTF files

Sequenticon ⭐ 28

👾 Generate identicons for DNA sequences with Python

Crazydoc ⭐ 22

Read DNA sequences from colourful Microsoft Word documents

Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.

Chromegcn ⭐ 16

Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification

Scadnano Python Package ⭐ 11

Python scripting library for generating designs readable by scadnano.

Raxml_ascbias ⭐ 11

Script for removing or counting invariant sites for the RAxML ascertainment bias corrections

Variational Auto Encoders for learning binding signatures of transcription factors

Bioinformatic approach to identify functional transcription factor binding motifs

Deepdnashape ⭐ 5

A method to predict DNA shape features considering farther flanking region.

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