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Search results for dna sequences
dna-sequences
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39 search results found
Enformer Pytorch
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359
Implementation of Enformer, Deepmind's attention network for predicting gene expression, in Pytorch
Astsa
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112
R package to accompany Time Series Analysis and Its Applications: With R Examples -and- Time Series: A Data Analysis Approach Using R
Intervene
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111
Intervene: a tool for intersection and visualization of multiple genomic region and gene sets
Verifybamid
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78
VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.
Gblastn
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52
G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.
Smashpp
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52
Find and visualize rearrangements in DNA sequences
Bioalignments.jl
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51
Sequence alignment tools
Metacache
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49
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
Benchling Api
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34
A python wrapper for the benchling api
Bioinf Commons
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30
Bioinformatics library in Kotlin
Pygtftk
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30
A python package and a set of shell commands to handle GTF files
Sequenticon
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28
👾 Generate identicons for DNA sequences with Python
Bartender 1.1
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26
This bartender version could handle arbitrary length of barcode
Ssake
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24
🍶Genome assembly with short sequence reads
Crazydoc
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22
Read DNA sequences from colourful Microsoft Word documents
Stratag
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22
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
Fastafs
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19
toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files
Scadnano
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18
Web application for designing DNA structures such as DNA origami.
Graph Part
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16
A biological sequence data partitioning method
Chromegcn
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16
Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification
Mchap
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16
Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.
Yass
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14
genomic alignment similarity search tool
Tensorflow Dnns For Predicting Dna Transcription Factor Binding
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13
Deep neural networks implemented in TensorFlow & Python for predicting whether transcription factors will bind to given DNA sequences
Geco3
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12
An efficient DNA sequence compressor using Neural Networks
Scadnano Python Package
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11
Python scripting library for generating designs readable by scadnano.
Raxml_ascbias
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11
Script for removing or counting invariant sites for the RAxML ascertainment bias corrections
Smash
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9
A tool to find and visualize rearrangements in DNA sequences
Seqshuffle.jl
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9
Shuffle the string sequences such that the k-mer frequency is preserved in each string
Dna Laboratory
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8
DNA Encoder/Decoder For .NET
Bindvae
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8
Variational Auto Encoders for learning binding signatures of transcription factors
Blss
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8
A suite of unique bioinformatics tools for the brave explorer.
Ebt
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6
Evolutionary Bioinformatics Toolkit (EBT)
Maggie
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6
Bioinformatic approach to identify functional transcription factor binding motifs
Motifs.jl
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6
DNA Motif discovery that includes the discovery of flexible (long or gapped) motifs.
Pseudoseq.jl
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6
Fake genomes, fake sequencing, real insights.
Deepdnashape
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5
A method to predict DNA shape features considering farther flanking region.
Gene Sequence Primer
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5
Gene and Primer Sequence Analysis for SARS-CoV-2, EGFR(Non Small Lung Cancer Cell), Influenza DNAs ### How can I check my Oligo primers to ensure there are no significant primer design issues? - The difference between melting temperatures (Tm) of the primers should be less than 5°C. - The GC content should be between 35-80% or equivalent to the product being amplified. - The Delta G value of any self-dimers, hairpins, and heterodimers should be weaker (more positive) than -9.0 kcal/mole. Posit
Kspider
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5
A simple yet powerful sequence clustering tool.
Motif Detection Vb6
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5
This application searches inside a text sequence for words that resemble those inside a list of similar words.
1-39 of 39 search results
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