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digital-pathology x

24 search results found

A framework for high-performance medical image processing, neural network inference and visualization

Tools for computational pathology

Histolab ⭐ 315

Library for Digital Pathology Image Processing

Tiatoolbox ⭐ 277

Computational Pathology Toolbox developed by TIA Centre, University of Warwick.

Torchstain ⭐ 100

Stain normalization tools for histological analysis and computational pathology

PAthological QUpath Obsession - QuPath and Python conversations

Tiffslide ⭐ 73

TiffSlide - cloud native openslide-python replacement based on tifffile

Pathology Gan ⭐ 47

Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'

Cellseg_models.pytorch ⭐ 40

Encoder-Decoder Cell and Nuclei segmentation models

Focuslitenn ⭐ 35

Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"

Ssl_cr_histo ⭐ 32

Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.

Deeplearning Digital Pathology ⭐ 32

Full package for applying deep learning to virtual slides.

Wsidicom ⭐ 25

Python package for reading DICOM WSI file sets.

Wsitools ⭐ 23

Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

WSI classification

Adaptive_color_deconvolution ⭐ 18

adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"

Fast Stain Normalization ⭐ 16

🌟 GPU-accelerated stain normalization command line tool

Opentile ⭐ 11

Python library for reading tiles from wsi tiff-files.

Labelslide ⭐ 10

LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)

Pyhistology ⭐ 9

Python package that uses colorspace-based segmentation to analyze histopathology images.

Torch Staintools ⭐ 9

Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms

Learning A Low Dimensional Manifold Of Realcancer Tissue ⭐ 6

Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Learning a low dimensional manifold of real cancer tissue with PathologyGAN 2020'.

Breast Epithelium Segmentation ⭐ 5

🌸 Breast epithelium segmentation through IHC-guided supervision

Cellseg_gsontools ⭐ 5

Feature extraction from GEOJson nuclei and tissue segmentation maps

Fp Dsa Plugin ⭐ 5

Digital Slide Archive plugin to enable FAST deployment of pretrained CNNs for digital pathology

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