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Search results for digital pathology
digital-pathology
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40 search results found
Qupath
⭐
934
QuPath - Bioimage analysis & digital pathology
Fast
⭐
386
A framework for high-performance medical image processing, neural network inference and visualization
Pathml
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341
Tools for computational pathology
Histolab
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315
Library for Digital Pathology Image Processing
Cucim
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282
cuCIM - RAPIDS GPU-accelerated image processing library
Tiatoolbox
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277
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Camicroscope
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191
Digital pathology image viewer with support for human/machine generated annotations and markups.
Fast Pathology
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108
⚡ Open-source software for deep learning-based digital pathology
Torchstain
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100
Stain normalization tools for histological analysis and computational pathology
Slim
⭐
97
Interoperable web-based slide microscopy viewer and annotation tool
Paquo
⭐
76
PAthological QUpath Obsession - QuPath and Python conversations
Slideseg
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73
A Python module that produces image patches and annotation masks from whole slide images for deep learning in digital pathology.
Tiffslide
⭐
73
TiffSlide - cloud native openslide-python replacement based on tifffile
Cytomine Core
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73
Cytomine-Core is the main web server implementing the Cytomine API
Pathology Gan
⭐
47
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Pathology GAN: Learning deep representations of cancer tissue. Proceedings of The 3rd International Conference on Medical Imaging with Deep Learning (MIDL) 2020'
Cellseg_models.pytorch
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40
Encoder-Decoder Cell and Nuclei segmentation models
Nocodeseg
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37
🔬 Code-free deep segmentation for computational pathology
Focuslitenn
⭐
35
Official PyTorch and MATLAB implementations of our MICCAI 2020 paper "FocusLiteNN: High Efficiency Focus Quality Assessment for Digital Pathology"
Ssl_cr_histo
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32
Official code for "Self-Supervised driven Consistency Training for Annotation Efficient Histopathology Image Analysis" Published in Medical Image Analysis (MedIA) Journal, Oct, 2021.
Deeplearning Digital Pathology
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32
Full package for applying deep learning to virtual slides.
Wsidicom
⭐
25
Python package for reading DICOM WSI file sets.
Wsitools
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23
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
Digitalhistopath
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23
Acmil
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21
WSI classification
Adaptive_color_deconvolution
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18
adaptive color deconvolution for paper "Zheng et al., CMPB, 2019"
H2g Net
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17
🚀 H2G-Net: Segmentation of breast cancer region from whole slide images
Fast Stain Normalization
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16
🌟 GPU-accelerated stain normalization command line tool
Tissuumapscore
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12
TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUmaps can be used as a web service or locally in your computer, and allows users to share regions of interest and local statistics.
Opentile
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11
Python library for reading tiles from wsi tiff-files.
Labelslide
⭐
10
LabelSlide is a slide annotation tool and label object bounding boxes in virtual slides (generally used in pathology)
Pyhistology
⭐
9
Python package that uses colorspace-based segmentation to analyze histopathology images.
Torch Staintools
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9
Pytorch-adaptation of GPU-accelerated StainTool's stain normalization algorithms
Qupath Extension Openvino
⭐
6
Intel OpenVINO extension for QuPath, a digital pathology platform
Puzzletuning
⭐
6
The official repo of PuzzleTuning: Explicitly Bridge Pathological and Natural Image with Puzzles
Learning A Low Dimensional Manifold Of Realcancer Tissue
⭐
6
Corresponding code of 'Quiros A.C., Murray-Smith R., Yuan K. Learning a low dimensional manifold of real cancer tissue with PathologyGAN 2020'.
Breast Epithelium Segmentation
⭐
5
🌸 Breast epithelium segmentation through IHC-guided supervision
Fp Dsa Plugin
⭐
5
Digital Slide Archive plugin to enable FAST deployment of pretrained CNNs for digital pathology
Zif
⭐
5
Zoomable Image Format
Gleason_grade
⭐
5
Code for gleason grading a whole slide in 1 minute or less
Cellseg_gsontools
⭐
5
Feature extraction from GEOJson nuclei and tissue segmentation maps
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1-40 of 40 search results
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