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Search results for python connectomics

22 search results found

Flood-Filling Networks for instance segmentation in 3d volumes.

Euclidean Distance Transform 3d ⭐ 201

Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.

Pytorch_connectomics ⭐ 151

PyTorch Connectomics: segmentation toolbox for EM connectomics

Qsiprep ⭐ 120

Preprocessing and reconstruction of diffusion MRI

Cloud Volume ⭐ 120

Read and write Neuroglancer datasets programmatically.

Kimimaro ⭐ 113

Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)

Skeletor ⭐ 109

3D skeleton extraction from meshes.

The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠

Dotmotif ⭐ 65

A performant, powerful query framework to search for network motifs

Marching Cubes & Mesh Simplification on multi-label 3D images.

Scalable Optical Flow-based Image Montaging and Alignment

Grandiso Networkx ⭐ 39

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.

Toolkit for the generation and analysis of volume eletron microscopy based synaptic connectomes of brain tissue.

A unified environment for DNN-based automated segmentation of neuronal EM images

Cluster_tools ⭐ 30

Distributed segmentation for bio-image-analysis

Cython bindings for fpzip, a floating point image compression algorithm.

Connectomics ⭐ 18

Diluvian ⭐ 14

Flood filling networks for segmenting electron microscopy of neural tissue

Nature_methods_multicut_pipeline ⭐ 11

35_methods_miccai_2017 ⭐ 9

Code for MICCAI 2017 paper

Finite-Element Assisted Brain Assembly System for stitching & alignment of connectomics data

FOD-Net: A Deep Learning Method for Fiber Orientation Distribution Angular Super Resolution

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